CN189136

Overview
NameCN189136
Unique NameCN189136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1278 contig Csv1_Contig1278:24..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RL24_PAGMA (60S ribosomal protein L24 OS=Pagrus major GN=rpl24 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 54/111 (48.65%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 354
            +K ELC FSG KIYPG G R+ R D +VF F N+KC+  F  +  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHKKGQSEEVAKKRTRRAVK--FQRAITGASLAEIMAKRNQKPEVRKAQREQAI 109          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RL24_GILMI (60S ribosomal protein L24 OS=Gillichthys mirabilis GN=rpl24 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 54/111 (48.65%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 354
            +K ELC FSG KIYPG G R+ R D +VF F N+KC+  F  +  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHKKGQSEEVTKKRTRRAVK--FQRAITGASLAEIMAKRNQKPEVRKAQREQAI 109          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RL24_BRABE (60S ribosomal protein L24 OS=Branchiostoma belcheri GN=RPL24 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 354
            +K ELC +SG KIYPG G R+ R+D +V+ F N+KC+  F  +  P ++TWT +YR++HKK    E  KK+ R T K + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKIELCLYSGYKIYPGHGKRYARTDGRVYTFLNAKCEASFLMKRNPREITWTVLYRRKHKKGQQEEIQKKRSRRTAK-FQRAITGASLTEIMAKRNQKPEVRKAQREQAV 109          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RL24_DANRE (60S ribosomal protein L24 OS=Danio rerio GN=rpl24 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.138e-23
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 354
            +K ELC FSG KIYPG G R+ R D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARVDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEVSKKRTRRAVK--FQRAITGASLAEILAKRNQKPEVRKAQREQAI 109          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RL24_DICDI (60S ribosomal protein L24 OS=Dictyostelium discoideum GN=rpl24 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 51/109 (46.79%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAA 351
            +KT LC +S  KIYP +G++F+R DS+VF F N+K +  F  ++ P  + W+ +YR+ +K      + KKK R TKK   R+IVGA+LEVIQ++R +KPEV+ AA E A
Sbjct:    1 MKTSLCNYSEFKIYPARGMKFVRGDSKVFHFINTKVESLFFRKINPRDIRWSMVYRRIYKNTTTDVSAKKKARKTKK-VERNIVGASLEVIQQKRAQKPEVKQAAAEQA 108          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RL24_ICTPU (60S ribosomal protein L24 OS=Ictalurus punctatus GN=rpl24 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 354
            +K ELC FSG KIYPG G  + R D +VF F N+KC+  F  +  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGPVYARIDGKVFQFLNAKCESAFLTKRNPRQINWTVLYRRKHKKGQSEEVTKKRTRRAVK--FQRAITGASLAEILAKRNQKPEVRKAQREQAI 109          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RL24_DROME (60S ribosomal protein L24 OS=Drosophila melanogaster GN=RpL24 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 51/110 (46.36%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 354
            +K  LC FSG KIYPG G   ++ D + F F + KC+R +  +  P K+TWT +YR++H+K I  EA KK+ R T+K + R+IVGA+L  I  +R  KPEVR A R+ A+
Sbjct:    1 MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHRKGIEEEASKKRTRRTQK-FQRAIVGASLAEILAKRNMKPEVRKAQRDQAI 109          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RL24_YARLI (60S ribosomal protein L24 OS=Yarrowia lipolytica GN=RPL24 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.320e-21
Identity = 50/106 (47.17%), Postives = 70/106 (66.04%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAR 342
            +K EL  FSG KIYPG+G  F+R DS++F F +SK    F  R  P ++ WT +YR++HKK I  E  KK+ R + K   R IVGA+L+VI+++R  +PE R+A R
Sbjct:    1 MKIELDSFSGNKIYPGRGTLFVRGDSKIFRFYSSKTASLFKQRKNPRRIAWTVLYRRKHKKGITEEVSKKRSRKSVKAV-RGIVGASLDVIKEKRNARPETRNATR 105          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RL24_SPOFR (60S ribosomal protein L24 OS=Spodoptera frugiperda GN=RpL24 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.117e-20
Identity = 51/110 (46.36%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 354
            +K  LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK    E  KK+ R T+K Y R+IVGA+L  I  +R  KPEVR A R+ A+
Sbjct:    1 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQTKKRTRRTQK-YQRAIVGASLSDIMAKRNMKPEVRKAQRDQAI 109          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RL24_PLUXY (60S ribosomal protein L24 OS=Plutella xylostella GN=RpL24 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.117e-20
Identity = 52/110 (47.27%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 354
            +K  LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK    E  KK+ R T+K Y R+IVGA+L  I  +R  KPEVR A RE A+
Sbjct:    1 MKIGLCAYSGYKIYPGHGKTMVKVDGKNFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRRTQK-YQRAIVGASLSDIMAKRNMKPEVRKAQREQAI 109          
The following BLAST results are available for this feature:
BLAST of CN189136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL24_PAGMA6.997e-2348.6560S ribosomal protein L24 OS=Pagrus major GN=rpl24... [more]
RL24_GILMI6.997e-2348.6560S ribosomal protein L24 OS=Gillichthys mirabilis... [more]
RL24_BRABE6.997e-2347.2760S ribosomal protein L24 OS=Branchiostoma belcher... [more]
RL24_DANRE9.138e-2348.6560S ribosomal protein L24 OS=Danio rerio GN=rpl24 ... [more]
RL24_DICDI1.559e-2246.7960S ribosomal protein L24 OS=Dictyostelium discoid... [more]
RL24_ICTPU5.923e-2247.7560S ribosomal protein L24 OS=Ictalurus punctatus G... [more]
RL24_DROME1.010e-2146.3660S ribosomal protein L24 OS=Drosophila melanogast... [more]
RL24_YARLI1.320e-2147.1760S ribosomal protein L24 OS=Yarrowia lipolytica G... [more]
RL24_SPOFR1.117e-2046.3660S ribosomal protein L24 OS=Spodoptera frugiperda... [more]
RL24_PLUXY1.117e-2047.2760S ribosomal protein L24 OS=Plutella xylostella G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001G01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189136 ID=CN189136; Name=CN189136; organism=Citrus sinensis; type=EST; length=681bp
GACCCTTCATCAGAAACCATGGTTCTCAAGACTGAACTTTGCAAATTCAG
CGGTGCCAAGATATACCCTGGTAAGGGTATCAGATTTATTCGTTCAGACT
CTCAGGTTTTCCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAAC
CGATTGAAGCCATCGAAGCTTACATGGACAGCCATGTACAGGAAACAGCA
CAAGAAGGACATTGCTGCTGAGGCAGTTAAGAAGAAGCGTCGTGCCACTA
AGAAGCCCTATTCAAGATCTATAGTTGGTGCCACCTTGGAAGTTATCCAG
AAGAGAAGAACTGAGAAGCCAGAAGTCCGAGATGCTGCACGGGAGGCTGC
ACTTCGTGAAATTAAGGAGAGGATCAAGAAGACTAAGGATGAAAAGAAGG
CAAAGAAAGCGGAGACGATGTCCAAGTCACAGAAGTCTCAAGTCAAAAGT
AGCGTGCCTAAGGGTGCCGCCCCGAAGGGCCCCAAGCTAGGCGGTGGTGG
TGGAAAGCGGTGAATTGCTTAGTCTTTTCAAATCTGCAGATGAGTATAAA
CAATTAGAACTTAATTTCATGTTTCTTGTATGGATTGATCAATCATGTAG
ACCAGATTTTTTTGTGGTTTTTGTTTATGGTTTTGCATTGNGAGTTAATT
TGCCTTTTACTTAATTGAATCAAAGTTTTCT
back to top