CN189136

Overview
NameCN189136
Unique NameCN189136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1278 contig Csv1_Contig1278:24..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RL24_SCHJA (60S ribosomal protein L24 OS=Schistosoma japonicum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 44/110 (40.00%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 354
            +K E+C +SG K+YPG G R IR D + F F N K +R  + +  P +++WT +YR+++KK ++ E  K +     K  +R I GA+L  I  +R +KPEVR A R+ A+
Sbjct:    1 MKLEVCSYSGFKVYPGHGKRVIRVDGRSFYFINKKSERSHYLKRNPREISWTVLYRRKYKKGMSEEQTKNELSVLTKT-ARGIAGASLAEIMAKRNQKPEVRKAMRDQAI 109          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_SCHPO (Ribosome biogenesis protein rlp24 OS=Schizosaccharomyces pombe GN=rlp24 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDI---AAEAVKKKRRATKKPYSRSIVGATLEVIQK 303
            ++   C F    +YPG GI F+R+DS+VF F  SKC + F  +  P K+ WT  YRK H K++    A AV   RR     Y R+++  TL  +++
Sbjct:    1 MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGKEMVYDTALAVTAARRNVPVRYDRNVIATTLNAMKR 96          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_DROME (Probable ribosome biogenesis protein RLP24 OS=Drosophila melanogaster GN=CG6764 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12
Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEA--VKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVR 330
            ++ + C F  +KIYPG G++F+R+D +VF F   KC + F  +  P K+ WT  YRK   K++A +     +KRR     YSR      LE I KR TE  E R
Sbjct:    1 MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRKAAGKELAIDPSFEFEKRRNVPMKYSRETWQKGLEAI-KRVTEIKEKR 103          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAV--KKKRRATKKPYSRSIVGATLEVIQK 303
            ++ E C F  + IYPG GI+F+R+D+++F F  SKC + F  +  P K+ WT  +R  H KD+  +     +K+R   + Y R++   TL  I+K
Sbjct:    1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKK 95          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_YARLI (Ribosome biogenesis protein RLP24 OS=Yarrowia lipolytica GN=RLP24 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1
Query:   40 CKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVK--KKRRATKKPYSRSIVGATLEVIQK 303
            C F  + +YPGKGI F+R+DS+ F F  SKC + F  +  P KL WT  +RK   K++  ++      RR     Y+R +V  TLE ++K
Sbjct:    6 CHFCSSPVYPGKGIMFVRNDSKEFRFCRSKCHKNFKMKRNPRKLRWTKAFRKAAGKEMVVDSTLAFSARRDVPVRYNRDLVEKTLEAMEK 95          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_DANRE (Probable ribosome biogenesis protein RLP24 OS=Danio rerio GN=rsl24d1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 34/95 (35.79%), Postives = 53/95 (55.79%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAE--AVKKKRRATKKPYSRSIVGATLEVIQK 303
            ++ E C F  A +YPG G+ F+R+D +VF F  SKC + F  +  P K  WT  +RK   K++  +     +KRR T   Y+R +   T+E ++K
Sbjct:    1 MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAGKELTVDNSLEFEKRRNTPVKYNRELWSKTVEAMRK 95          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_CANGA (Ribosome biogenesis protein RLP24 OS=Candida glabrata GN=RLP24 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = 1
Query:   40 CKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVK--KKRRATKKPYSRSIVGATLEVIQK 303
            C F  + +YPG GI F+R+D++ F F  SKC + F  R  P KL WT  +RK   K++A ++     +RR     Y+R +V  TL+ + +
Sbjct:    6 CHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKNFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSR 95          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_ASHGO (Ribosome biogenesis protein RLP24 OS=Ashbya gossypii GN=RLP24 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 1
Query:   40 CKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVK--KKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREA 348
            C F  + +YPG GI F+R+D++ F F  SKC + F  R  P KL WT  +RK   K++A ++     +RR     Y+R +V  TL    K  T   E+R     A
Sbjct:    6 CHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVETTL----KAMTRIEEIRQKRERA 106          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RLP24_KLULA (Ribosome biogenesis protein RLP24 OS=Kluyveromyces lactis GN=RLP24 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVK--KKRRATKKPYSRSIVGATLEVIQK 303
            ++   C F  +  YPG GI F+R+D++ F F  SKC + F  R  P KL WT  +RK   K++A ++     +RR     Y+R +V  TL+ + +
Sbjct:    1 MRVYACHFCSSPCYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLRWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMSR 95          
BLAST of CN189136 vs. ExPASy Swiss-Prot
Match: RL24_CAEEL (60S ribosomal protein L24 OS=Caenorhabditis elegans GN=rpl-24.1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 35/111 (31.53%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   25 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDI--AAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAA 351
            +K E C +SG KI+PG G R +R+D +V +F + K  +    R  P  + WT +YR ++KK      +  +KK + + +  +R++ G +L+ I  +R +  + R   RE A
Sbjct:    1 MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNKKGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRNQTEDFRRQQREQA 111          
The following BLAST results are available for this feature:
BLAST of CN189136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL24_SCHJA3.973e-1840.0060S ribosomal protein L24 OS=Schistosoma japonicum... [more]
RLP24_SCHPO1.013e-1337.50Ribosome biogenesis protein rlp24 OS=Schizosacchar... [more]
RLP24_DROME1.120e-1239.42Probable ribosome biogenesis protein RLP24 OS=Dros... [more]
RLP24_ARATH1.462e-1235.79Probable ribosome biogenesis protein RLP24 OS=Arab... [more]
RLP24_YARLI2.494e-1238.89Ribosome biogenesis protein RLP24 OS=Yarrowia lipo... [more]
RLP24_DANRE4.255e-1235.79Probable ribosome biogenesis protein RLP24 OS=Dani... [more]
RLP24_CANGA7.257e-1236.67Ribosome biogenesis protein RLP24 OS=Candida glabr... [more]
RLP24_ASHGO1.238e-1136.19Ribosome biogenesis protein RLP24 OS=Ashbya gossyp... [more]
RLP24_KLULA1.617e-1134.74Ribosome biogenesis protein RLP24 OS=Kluyveromyces... [more]
RL24_CAEEL2.112e-1131.5360S ribosomal protein L24 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001G01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189136 ID=CN189136; Name=CN189136; organism=Citrus sinensis; type=EST; length=681bp
GACCCTTCATCAGAAACCATGGTTCTCAAGACTGAACTTTGCAAATTCAG
CGGTGCCAAGATATACCCTGGTAAGGGTATCAGATTTATTCGTTCAGACT
CTCAGGTTTTCCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAAC
CGATTGAAGCCATCGAAGCTTACATGGACAGCCATGTACAGGAAACAGCA
CAAGAAGGACATTGCTGCTGAGGCAGTTAAGAAGAAGCGTCGTGCCACTA
AGAAGCCCTATTCAAGATCTATAGTTGGTGCCACCTTGGAAGTTATCCAG
AAGAGAAGAACTGAGAAGCCAGAAGTCCGAGATGCTGCACGGGAGGCTGC
ACTTCGTGAAATTAAGGAGAGGATCAAGAAGACTAAGGATGAAAAGAAGG
CAAAGAAAGCGGAGACGATGTCCAAGTCACAGAAGTCTCAAGTCAAAAGT
AGCGTGCCTAAGGGTGCCGCCCCGAAGGGCCCCAAGCTAGGCGGTGGTGG
TGGAAAGCGGTGAATTGCTTAGTCTTTTCAAATCTGCAGATGAGTATAAA
CAATTAGAACTTAATTTCATGTTTCTTGTATGGATTGATCAATCATGTAG
ACCAGATTTTTTTGTGGTTTTTGTTTATGGTTTTGCATTGNGAGTTAATT
TGCCTTTTACTTAATTGAATCAAAGTTTTCT
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