CN188943

Overview
NameCN188943
Unique NameCN188943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:18..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.228e-66
Identity = 146/241 (60.58%), Postives = 170/241 (70.54%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSARE-ALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGY------GLKPARPQ-GDSFIHALE--CEPTLPIG 708
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFC+  SM +TLERYQK +YG P+  +  +E  L  +S+ EYLKLKAR E LQR+QRNLLGE+LG L  KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L ++             L E  Q++       A   GY       ++   P  G+ F H+LE   EPTL IG
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRK-------------LEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIG 228          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.462e-63
Identity = 123/169 (72.78%), Postives = 145/169 (85.80%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 522
            MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFC+TS M KTLERYQ+C+YG+ E +  ++E    +S QEYLKLKA+ + LQRS RNLLGE+LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ L
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKET--ESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRAL 167          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.534e-58
Identity = 128/231 (55.41%), Postives = 157/231 (67.97%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPARPQGDSFIHALECEPTLPIG 708
            MGRG+VELKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RG+L+EF T+S M KTLERY+ CNY       SA    EL++ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK L ++           +Q   G  +    L+ S +D G     A      F+H   C+P+L IG
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPS-GHASEANQEFLHHAICDPSLHIG 215          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.534e-58
Identity = 128/231 (55.41%), Postives = 157/231 (67.97%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPARPQGDSFIHALECEPTLPIG 708
            MGRG+VELKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RG+L+EF T+S M KTLERY+ CNY       SA    EL++ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK L ++           +Q   G  +    L+ S +D G     A      F+H   C+P+L IG
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPS-GHASEANQEFLHHAICDPSLHIG 215          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.507e-55
Identity = 119/218 (54.59%), Postives = 158/218 (72.48%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTT-SSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLRHA---AFAGLQLMEGYQ--------VNTLQLNPSAEDCGY 633
            MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAE+AL+IFSNRGKLYEFC++ S M +T+++Y+K +Y   +PN SA++  +    Q+YLKLK+R E LQ SQR+LLGEEL  ++  ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L ++      A   +F G    E  Q        +++ Q NP  ++ G+
Sbjct:    1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAKDLQD--KYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGF 216          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.666e-54
Identity = 110/172 (63.95%), Postives = 135/172 (78.49%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQR 531
            MGRG+VELKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF ++S M KTLERY+ CNY + +      E     + QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L ++
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENE----INYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKK 168          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.666e-54
Identity = 110/172 (63.95%), Postives = 135/172 (78.49%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQR 531
            MGRG+VELKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF ++S M KTLERY+ CNY + +      E     + QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L ++
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENE----INYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKK 168          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.724e-51
Identity = 108/169 (63.91%), Postives = 133/169 (78.70%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 522
            MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  ++ + KTLERYQ C Y A + N +  E    +   E  KLKA++EALQR+QR+LLGE+LGPL+ KEL+ LE+QL+ +L Q R  +TQ M++ + EL+ KE+ L E N+ L
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGITKTLERYQHCCYNAQDSNNALSET--QSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQL 166          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 5.017e-51
Identity = 116/231 (50.22%), Postives = 151/231 (65.37%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPARPQGDSFIHALECEPTLPIG 708
            MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  ++ + KTLE+Y  C Y A   N +       +  QE  +LK + E LQRSQR++LGE+LGPL+ KEL+ LE+QL+ SL Q R  +TQ M++ + +L+ KE+ L E NK L  +      ++     + + +   T+         G  +  A+P  D     ++CEPTL IG
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVV-------SGGRVLNAQPPPD-----IDCEPTLQIG 218          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 8.558e-51
Identity = 101/172 (58.72%), Postives = 136/172 (79.07%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQR 531
            MGRG+V L+RIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVAL++FS+ G+LY+F ++S+M+KTLERYQ+  Y + +      + ++  + QEY+ LKA  E LQ+SQRNLLGE+L PL + ELE LE Q+  +LKQIRS +TQ +LD L +L+ KEQ+L +AN+ L ++
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQ-NNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRK 171          
The following BLAST results are available for this feature:
BLAST of CN188943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MADS8_ORYSJ4.228e-6660.58MADS-box transcription factor 8 OS=Oryza sativa su... [more]
CMB1_DIACA7.462e-6372.78MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MADS5_ORYSJ5.534e-5855.41MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI5.534e-5855.41MADS-box transcription factor 5 OS=Oryza sativa su... [more]
AGL3_ARATH1.507e-5554.59Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MADS1_ORYSJ1.666e-5463.95MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI1.666e-5463.95MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS6_ORYSJ1.724e-5163.91MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD17_ORYSJ5.017e-5150.22MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MAD34_ORYSJ8.558e-5158.72MADS-box transcription factor 34 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188943 ID=CN188943; Name=CN188943; organism=Citrus sinensis; type=EST; length=710bp
GCGTAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGA
GAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTT
TGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTC
ATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCACTACTTCAAG
CATGGTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAG
AACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAACTAGCCAGCAAGAA
TATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAA
TCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCAC
TTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACT
CAGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCT
GAGCGAAGCAAATAAGACCCTCGGACAAAGGACGATGACGCTAAGGCACG
CCGCTTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTT
CAATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCG
ACCTCAGGGCGATAGCTTCATTCACGCCTTGGAATGTGAACCCACATTGC
CAATTGGATA
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