CN188943

Overview
NameCN188943
Unique NameCN188943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:18..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 84/180 (46.67%), Postives = 114/180 (63.33%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLRHAA 555
            M RGR ELKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYEF +  S+ KT++RY+   Y     N    +      + + L L  + EAL  S+R +LGE L   + +EL  LE +L+ SL  IR  +T+ +   + +L+ KE+ L + N+ L  +   L  AA
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKA--YTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGKHRNLEAAA 178          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.621e-33
Identity = 80/175 (45.71%), Postives = 118/175 (67.43%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQ---EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQR 531
            M RG+ ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEV+LIIFS +GKLYEF  +S+M  T++RY +      +  VS +   E   Q    E   +  + E L+ S+R LLGE +G  + +EL+ +E+QL+ S+K IR+ +TQ   + + +L+ KE+ L+  N+ L ++
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEF-ASSNMQDTIDRYLR----HTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEK 170          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.118e-33
Identity = 87/188 (46.28%), Postives = 125/188 (66.49%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQ---KCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLRHAAFAGLQ 570
            M RG+ E+KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVAL+IFS R KLYEF ++SS+  T+ERYQ   K      + N ++++A + TS      L  + E L+ S+R LLGE +   + +EL+ LE QLD SL +IR+ + Q + + + +L+ +E+ L + NK L ++ + +  A  A  Q
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEF-SSSSIAATIERYQRRIKEIGNNHKRNDNSQQARDETS-----GLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTATIASSQ 182          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33
Identity = 77/178 (43.26%), Postives = 115/178 (64.61%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLR 546
            MGRG++ ++RI+N  +RQVTF+KRRNG+ KKA EL++LCDAEV L+IFS+ G+LYE+ +T SM   ++RY K      E    A    EL   Q+E   L+ +   LQ + R L+GE+L  LN KEL+SLE QL++SL+ +R+ +   ++D + EL  K  L+ + N  L ++   +R
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSST-SMKSVIDRYGK---SKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISLIR 174          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.058e-32
Identity = 83/179 (46.37%), Postives = 119/179 (66.48%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKA-------RYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQR 531
            M RG+ ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RGKLYEF + S+  KT+ERY+       + N+  +     T QQ+  ++KA       + EAL+  +R LLGE+L   + +EL SLE +L+ SL  IR  +T+ + + + +L+ KE  L + N+ L ++
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQ-KTIERYRTYT----KENIGNK-----TVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREK 169          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32
Identity = 75/175 (42.86%), Postives = 113/175 (64.57%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQR-SQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTM 537
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+   +S+  T+ERY+K N         A E      QQE  KL+ +  +LQ  + R ++G+ +  ++ ++L+ +E +L+  + +IR+ + + +   +  +Q +E  L   N  L  + +
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKSTVERYKKANSDTSNSGTVA-EVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVV 173          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 70/160 (43.75%), Postives = 114/160 (71.25%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTT-SSMVKTLERYQKCNYGAPEPNVSAR-EALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 489
            MGRG+V+++RIEN+++RQVTF+KRR GLLKKA+E++VLCD +VA I+FS +G L+ + ++ ++M + LE+Y +    +   NV      LE +   +++KL+ R EAL++SQRNL+G+EL  L  ++++ LE Q+D SL  IRS + + +++  T L+ K
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLMEKNTILEKK 160          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.381e-31
Identity = 76/175 (43.43%), Postives = 107/175 (61.14%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKC---NYGAPEPNVSAREALE---LTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 522
            M RG+++LKRIEN ++RQVTF KRR GLLKKA ELSVLCDAE+ ++IFS +GKL+E  T  +M   +++Y KC     G+     +A+E L+   L  + E   LK   E LQ+    + G   G +N +EL  LE+ L+  + QIRS +   ML  +  L++KE +L   NK L
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYL 175          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.767e-31
Identity = 80/177 (45.20%), Postives = 110/177 (62.15%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLR 546
            MGRG++E+KRIEN  +RQVTF+KRR GLLKKA+ELSVLCDAEVA+I+FS  GKL+EF +T SM KTL RY      +  P ++ +   +    +  L LK     LQ    ++ G+ L  L+ KEL+ LE+QL+ SL  +R  +   +   L E + KEQ     N+TL ++   LR
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSST-SMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDL-LKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQELR 175          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.532e-31
Identity = 73/158 (46.20%), Postives = 106/158 (67.09%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 489
            MGRG++E+KRI+N  +RQVTF+KRR+GL KKA ELS+LCDAEV L++FS+  +LY+F  +SSM   +ERY +     P   ++A    +L  QQE   L+ +   LQ   R LLG++L  L+ ++L++LE +L+MSLK IR  +   M+D + EL  K
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDF-ASSSMKSIIERYNETKED-PHQTMNASSEAKLW-QQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRK 155          
The following BLAST results are available for this feature:
BLAST of CN188943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD56_ORYSI5.573e-3446.67MADS-box transcription factor 56 OS=Oryza sativa s... [more]
SOC1_ARATH1.621e-3345.71MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
AGL19_ARATH2.118e-3346.28Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
MAD27_ORYSJ6.161e-3343.26MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MAD50_ORYSJ3.058e-3246.37MADS-box transcription factor 50 OS=Oryza sativa s... [more]
MADS3_ORYSJ6.812e-3242.86MADS-box transcription factor 3 OS=Oryza sativa su... [more]
MAD20_ORYSJ8.897e-3243.75MADS-box transcription factor 20 OS=Oryza sativa s... [more]
AGL12_ARATH3.381e-3143.43Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
AGL15_BRANA5.767e-3145.20Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
MAD23_ORYSJ7.532e-3146.20MADS-box transcription factor 23 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188943 ID=CN188943; Name=CN188943; organism=Citrus sinensis; type=EST; length=710bp
GCGTAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGA
GAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTT
TGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTC
ATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCACTACTTCAAG
CATGGTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAG
AACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAACTAGCCAGCAAGAA
TATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAA
TCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCAC
TTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACT
CAGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCT
GAGCGAAGCAAATAAGACCCTCGGACAAAGGACGATGACGCTAAGGCACG
CCGCTTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTT
CAATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCG
ACCTCAGGGCGATAGCTTCATTCACGCCTTGGAATGTGAACCCACATTGC
CAATTGGATA
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