CN188943

Overview
NameCN188943
Unique NameCN188943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:18..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.051e-28
Identity = 74/194 (38.14%), Postives = 113/194 (58.25%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLRH-AAFAGLQLMEGYQVN 594
            MGR ++E+KRIENK +RQVTF+KRRNGL++KA +LSVLCDA VAL++ S  GKLY F +  ++VK L+RY K +         A +   L  Q + L   + YE L+     L+G  +  ++   L  LE  L+ +L   R+ +T+ ML  +  L+ KE++L E N+ L  +     H  A A +++    Q++
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQH---------ADDLKALDHQSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVLASQMENNHHVGAEAEMEMSPAGQIS 185          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.679e-28
Identity = 74/175 (42.29%), Postives = 109/175 (62.29%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCT-TSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTM 537
            MGRG++E+KRIENK +RQVTF+KRR GLLKK +ELSVLCDA++ LIIFS++GKL+E+C+   SM + + RY +   GA  P    R  L      E  K++     LQ S +   G++L     +EL  LE+QL+ +L +IR+ + + M   +  L+  E++L + N  + Q  M
Sbjct:    4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTT-GASLPVEDNRVQL----YDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQWLM 173          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.968e-28
Identity = 68/171 (39.77%), Postives = 108/171 (63.16%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTS-SMVKTLERYQKCNYGAPE-PNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 522
            MGRG++E+KRIEN  +RQVTF+KRR+GL+KK +ELSVLCDA++ LI+FS +GKL E+CT   SM + ++RY K     PE  N +   A      +E  ++K     LQ + +   G++L  +  +EL  LE+ LD SL ++R+ + + + + +  L+  E +L + N+ +
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKRTEFMLEKENQEM 171          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 69/172 (40.12%), Postives = 108/172 (62.79%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQR 531
            M R ++++++I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFS+ GKL+EFC +SSM + LER+   +    + +  + E L+L    ++ ++           R + GEEL  L+ +EL+ LE+ L+  L ++  T++  ++  ++ELQ K   L + NK L Q+
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFC-SSSMKEVLERHNLQSKNLEKLDQPSLE-LQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQ 170          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.470e-26
Identity = 70/176 (39.77%), Postives = 105/176 (59.66%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTL 543
            M R ++++K+I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFS+ GKL+++ ++SSM + LER    +    + +  + E L+L     Y +L           R + GEEL  LN +EL+ LER L+  L ++   +   ++  + +LQ K   L E N+ L Q+ M +
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDY-SSSSMKQILERRDLHSKNLEKLDQPSLE-LQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVMEI 174          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26
Identity = 73/188 (38.83%), Postives = 110/188 (58.51%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTS-SMVKTLERYQKCN----YGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLRHAAFAG 564
            MGRG++E+KRIEN  NRQVT++KRRNG++KKA E++VLCDA+V+LIIF N GK++E+C+ S ++   L+ YQK +    + A   N+S           E  ++K   + +Q   R+L GE++  LN KEL  LE  L   L  I + ++    + L  ++  +Q+L E +K L         AA  G
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLS----------NEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQS----EILRMVRKNDQILEEEHKQLQYALHQKEMAAMGG 174          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 73/180 (40.56%), Postives = 105/180 (58.33%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLRHAA 555
            MGRG++E+KRIEN  NRQVT++KRRNG+LKKA E+SVLCDA V++IIF++ GK++EF +T S+V  L++Y K             +A       E  K+K   + +Q   R+L GE++  LN +EL  LE  LD  L  IR+ +     D L  ++ K Q + E    L  +   L  A+
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSST-SLVDILDQYHKLT------GRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQN----DLLRMMRKKTQSMEEEQDQLNWQLRQLEIAS 169          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.625e-25
Identity = 69/174 (39.66%), Postives = 104/174 (59.77%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCT-TSSMVKTLERYQ----KCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 522
            MGRG++E+KRIEN  NRQVTF+KRR+G+LKKA E+SVLCDAEV ++IFS+ GKLY++C+  +S+ + LE+YQ    K  +     ++SA          E  ++K   + +Q   R+L GE+L  L  KEL  +E  LD  +  +       ++D        +++L + NK L
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQTNSGKILWDEKHKSLSA----------EIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDK----LMDHWERHVRTDKMLEDENKLL 160          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.625e-25
Identity = 79/215 (36.74%), Postives = 119/215 (55.35%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTL-ERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLS-EANKTLGQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPARP 654
            MGRG++E+KRIEN  NRQVT++KRR G++KKA EL+VLCDA+VA+I+FS+ GK +EFC+ S+ +K + +RYQ+          S         Q+    LK     L+   R  +GE+L  L   EL  LE+ +D +LK++R  R  +++ T TE   K+   S EA +TL Q        AF  +    G          +A+   + + P++P
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQA------IGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRH-RKYHVITTQTETYKKKVKHSYEAYETLQQELGLREEPAFGFVDNTGGGWDGGAGAGAAADMFAFRVVPSQP 208          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.625e-25
Identity = 70/174 (40.23%), Postives = 106/174 (60.92%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQ---QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQ 528
            MGRG++E+KRIEN  NRQVT++KRRNG+LKKA E+SVLCDA V++IIF++ GK++EF +T S+V  L++Y K         ++ R  L+   +    E  K+K   + +Q   R+L GE++  LN +EL  LE  L+  L  IR+ + + +     + Q  E+   + N  L Q
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSST-SLVDILDQYHK---------LTGRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVLRMMRKKTQSMEEEQDQLNCQLRQ 164          
The following BLAST results are available for this feature:
BLAST of CN188943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
FLC_ARATH2.051e-2838.14MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
FBP24_PETHY2.679e-2842.29MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
DEF21_ANTMA5.968e-2839.77MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
SVP_ARATH1.329e-2740.12MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
JOIN_SOLLC1.470e-2639.77MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
MADS2_PETHY2.507e-2638.83Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
GLOB_TOBAC9.528e-2640.56Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
MADS2_ORYSJ1.625e-2539.66MADS-box transcription factor 2 OS=Oryza sativa su... [more]
MAD16_ORYSJ1.625e-2536.74MADS-box transcription factor 16 OS=Oryza sativa s... [more]
FBP1_PETHY1.625e-2540.23Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188943 ID=CN188943; Name=CN188943; organism=Citrus sinensis; type=EST; length=710bp
GCGTAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGA
GAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTT
TGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTC
ATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCACTACTTCAAG
CATGGTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAG
AACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAACTAGCCAGCAAGAA
TATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAA
TCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCAC
TTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACT
CAGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCT
GAGCGAAGCAAATAAGACCCTCGGACAAAGGACGATGACGCTAAGGCACG
CCGCTTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTT
CAATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCG
ACCTCAGGGCGATAGCTTCATTCACGCCTTGGAATGTGAACCCACATTGC
CAATTGGATA
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