CN188943

Overview
NameCN188943
Unique NameCN188943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:18..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 62/170 (36.47%), Postives = 101/170 (59.41%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTL-ERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 522
            M RG++++KRIEN+ NRQVT++KRRNGL KKA+ELSVLCDA+V++I+ S+  KL+E+ + ++  K L ++YQK         V    +     Q+   KL      L+R  R  +GE L  L  +++ +L   +D SLK IR  + + + + +   + K + + E ++ L
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKA------VGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNL 164          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 69/190 (36.32%), Postives = 109/190 (57.37%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERY--QKCNYGA--PEPNV--------------SAREALELTSQQEYLKLKARYEALQRSQ---RNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 522
            M R R E++RIE+   RQVTF+KRR GL KKA EL+VLCDA+VAL++FS+ GKL +F  +S+M + +++Y     N G    +P++              ++   + L  Q E+ K  +  E L  +    R + GEEL  L+ +EL+ +E+ L+  L+++  T+ Q  +  ++ELQ K   L+E N  L
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQF-ASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRL 189          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.507e-20
Identity = 59/170 (34.71%), Postives = 102/170 (60.00%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTL-ERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 522
            M RG++++KRIEN+ NRQVT++KRRNGL KKA+EL+VLCDA V++I+FS+  KL+E+ + ++  K + + YQ  +    + +V A +   +  Q+   KL      L+   +  LGE L  L+ +EL  LE +++ + K +R  + + + + +   + K +   +  K L
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTIS----DVDVWATQYERM--QETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNL 164          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 58/170 (34.12%), Postives = 99/170 (58.24%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTS-SMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 522
            MGRG++E+++IENK NRQVTF+KRRNG++KKA EL+VLCDA+V+L++ S+  KL+ + +   S+ K  + YQK         V          Q+++ K+      L+R     +G +L  L   EL +L+++++ ++ QIR+ +   + +     + K + L E +  L
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKIE------GVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDL 164          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 67/204 (32.84%), Postives = 110/204 (53.92%), Query Frame = 1
Query:   94 GLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTS-SMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLGQRTMTLRHAA-------------FAGLQLMEGYQV---NTLQLNPSAEDCGYGLKPARP 654
            GLLKKA EL++LCDA++ +IIFS+ GK++EF +   SM + ++RYQK +        + +   E+T      ++K   + LQ + R+  GE+L  L   E+  LE+QL++S+ ++RS + Q +   L  L+ KE +L E N+ L  R +   HAA               G+   + +Q    + LQL+P      + L+PA+P
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKLSGNCAPVYDNQQVYCEIT------RMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQNREL-YRVIQDHHAASMEQKMVDPSMLDHFGVFYQDDHQAARSSMLQLSPQLHP--FRLQPAQP 196          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19
Identity = 57/159 (35.85%), Postives = 91/159 (57.23%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFC--TTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQH 486
            MGRGR E+KRIEN   RQ TF KRR+GL KKA EL+VLCDA++ L++FS  GKLY F   T  S+ + +ERY+   +     ++      EL       K+ +  + L++  R +  ++        LE+LE  L+ +++++RS + + +   +  LQ+
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQERRAELE------KVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQN 153          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 48/131 (36.64%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERY--------------------QKCNYGAPEPNVSAREALELTSQQEYLKLKARYEALQRSQR 348
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +T  M K L +Y                    +K N G   P+  +  AL   ++++Y K+   ++ + +S +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYAST-DMDKVLLKYTEYNEPHESRTNSDIVEALNKKENKGCESPDPDSSYALTPRTEEKYKKINEEFDNMIKSHK 130          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 43/96 (44.79%), Postives = 68/96 (70.83%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEY 303
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +T  M K L +Y +  Y  P  + +  + +E  +++E+
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKYTE--YNEPHESRTNSDIVEALNKKEH 93          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 43/96 (44.79%), Postives = 68/96 (70.83%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEY 303
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +T  M K L +Y +  Y  P  + +  + +E  +++E+
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKYTE--YNEPHESGTNSDIVEALNKKEH 93          
BLAST of CN188943 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 43/96 (44.79%), Postives = 68/96 (70.83%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCTTSSMVKTLERYQKCNYGAPEPNVSAREALELTSQQEY 303
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +T  M K L +Y +  Y  P  + +  + +E  +++E+
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKYTE--YNEPHESRTNSDIVEALNKKEH 93          
The following BLAST results are available for this feature:
BLAST of CN188943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DEFA_ANTMA3.747e-2236.47Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MAD55_ORYSJ4.893e-2236.32MADS-box transcription factor 55 OS=Oryza sativa s... [more]
AP3_ARATH3.507e-2034.71Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
CMB2_DIACA1.740e-1934.12MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
AP32_ASAEU2.273e-1932.84MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
MAD32_ORYSJ8.638e-1935.85MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MEF2C_PIG3.072e-1636.64Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2A_RAT8.938e-1644.79Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_PIG8.938e-1644.79Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2A_HUMAN8.938e-1644.79Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001B06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188943 ID=CN188943; Name=CN188943; organism=Citrus sinensis; type=EST; length=710bp
GCGTAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGA
GAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTT
TGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTC
ATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCACTACTTCAAG
CATGGTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAG
AACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAACTAGCCAGCAAGAA
TATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAA
TCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCAC
TTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACT
CAGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCT
GAGCGAAGCAAATAAGACCCTCGGACAAAGGACGATGACGCTAAGGCACG
CCGCTTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTT
CAATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCG
ACCTCAGGGCGATAGCTTCATTCACGCCTTGGAATGTGAACCCACATTGC
CAATTGGATA
back to top