CN188932

Overview
NameCN188932
Unique NameCN188932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7674 contig Csv1_Contig7674:412..1128. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CN188932 vs. ExPASy Swiss-Prot
Match: Y1267_AQUAE (Uncharacterized protein aq_1267 OS=Aquifex aeolicus GN=aq_1267 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18
Identity = 53/163 (32.52%), Postives = 88/163 (53.99%), Query Frame = -3
Query:  227 GLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFF--VNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXVTSDQMLSIWRYXXXXXXXXXXVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 709
            G ++ SPVILY+   F+ P L   E+R   P++LGS +LF  G  F+Y+++ P AL F   + + + +     S+D Y  FVL L+ + G++F++P++         +T +Q+ S  +Y          ++ P  D  TQ+L+A PLL LY    ++ KL  R
Sbjct:   72 GFIIASPVILYQFWRFIEPALYSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGFTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKAGVITPEQLASFRKYFIVIAFVIGAIIAP--DVSTQVLMAIPLLLLYEISIFLGKLATR 232          
BLAST of CN188932 vs. ExPASy Swiss-Prot
Match: TATC_AZOCH (Sec-independent protein translocase protein tatC homolog OS=Azotobacter chroococcum mcd 1 GN=tatC PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17
Identity = 54/155 (34.84%), Postives = 82/155 (52.90%), Query Frame = -3
Query:  257 LLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXVTSDQMLSIWRYXXXXXXXXXXVLTPSTDPVTQMLLAAPL-----LGLYFG 706
            L L  PV+L+++  F+ PGL + E+R   P++  S +LFYAG+AF+Y+V+ P    FF +     V  +  I QY +FVL L F+ G++F+VPV          V    + +   Y          VLTP  D  +Q LLA P+     +G++FG
Sbjct:   84 LFLAMPVVLHQVWGFIAPGLYQHEKRIAMPLMASSVLLFYAGMAFAYFVVFPIMFGFFASVTPEGVAMMTDIGQYLDFVLTLFFAFGVAFEVPVATFLLIWVGIVDVASLRNSRPYVIVGCFVVGMVLTP-PDVFSQTLLAVPMWLLFEIGVFFG 237          
BLAST of CN188932 vs. ExPASy Swiss-Prot
Match: TATCY_BACSU (Sec-independent protein translocase protein tatCy OS=Bacillus subtilis GN=tatCy PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 53/150 (35.33%), Postives = 83/150 (55.33%), Query Frame = -3
Query:  263 GLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGV-VESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXVTSDQMLSIWRYXXXXXXXXXXVLTPSTDPVTQMLLAAPLLGLY 709
            G++L SPVILY++ AFV PGL   ER+     +  S +LF AG++FSY++L P  ++F    ++ + V  +  I++YF F+L L    GL FQ+PVI         VT   +  I +Y          ++TP  + ++ M++  PLL LY
Sbjct:   78 GIVLTSPVILYQLWAFVSPGLYEKERKVTLSYIPVSILLFLAGLSFSYYILFPFVVDFMKRISQDLNVNQVIGINEYFHFLLQLTIPFGLLFQMPVILMFLTRLGIVTPMFLAKIRKYAYFTLLVIAALITP-PELLSHMMVTVPLLILY 226          
BLAST of CN188932 vs. ExPASy Swiss-Prot
Match: TATC_HAEIN (Sec-independent protein translocase protein tatC OS=Haemophilus influenzae GN=tatC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 45/148 (30.41%), Postives = 73/148 (49.32%), Query Frame = -3
Query:  263 LLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXVTSDQMLSIWRYXXXXXXXXXXVLTPSTDPVTQMLLAAPLLGLY 706
            + +  P +LY+I AF+ P L + E+R + P++  S++LFY G+AF+Y+++ P   +FF   A   V     I  Y +F L L  + G+ F+VP+           T   +     Y          +LTP  D  +Q LLA P+  L+
Sbjct:   81 IFISVPYLLYQIWAFIAPALYQHEKRMIYPLLFSSTILFYCGVAFAYYIVFPLVFSFFTQTAPEGVTIATDISSYLDFALALFLAFGVCFEVPIAIILLCWTGITTVKALSEKRPYIIVAAFFIGMLLTP-PDVFSQTLLAIPMCLLF 227          
BLAST of CN188932 vs. ExPASy Swiss-Prot
Match: YDIJ_BACHD (Uncharacterized protein BH0553 OS=Bacillus halodurans GN=BH0553 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14
Identity = 48/160 (30.00%), Postives = 83/160 (51.88%), Query Frame = -3
Query:  227 LLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGV-VESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXVTSDQMLSIWRYXXXXXXXXXXVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 703
            +L  P+ILY++ AFV PGL   ER+     +  +  LF  G++F+Y++L P  + F    AE + +  L+ I++YF F+  +    G+ FQ+PV+         VT + + S+ +Y           +TP  + ++ +++  PLL LY    W+  LT R
Sbjct:   77 ILVFPIILYQLWAFVSPGLHENERKATLAYIPIAFFLFLGGLSFAYFILFPFLIQFIGGLAERLHINELYGINEYFTFLFQITMPFGVLFQLPVVVMFLTRLGIVTPEFLRSVRKYAFFVLLVVAGFITP-PELISHLMVTVPLLLLYEFSIWVSHLTYR 235          
BLAST of CN188932 vs. ExPASy Swiss-Prot
Match: TATC_HELPY (Sec-independent protein translocase protein tatC homolog OS=Helicobacter pylori GN=tatC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 40/148 (27.03%), Postives = 76/148 (51.35%), Query Frame = -3
Query:  263 LLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXVTSDQMLSIWRYXXXXXXXXXXVLTPSTDPVTQMLLAAPLLGLY 706
            +++  P+I +++  F+ PGL + E++ + P V   S +F  G AFSY+V+ P  + +   +   V  +  S   Y  F   L+   G++F++PV+         +T   + + ++Y          ++TP  D V+Q+ +A PL+GLY
Sbjct:   70 IVISMPIIFWQLWLFIAPGLYKNEKKVILPFVFFGSGMFLIGAAFSYYVVFPFIIEYLATFGSDVFAANISASSYVSFFTRLILGFGVAFELPVLAYFLAKVGLITDASLKAYFKYAIVVIFIVAAIITP-PDVVSQIFMALPLVGLY 216          
BLAST of CN188932 vs. ExPASy Swiss-Prot
Match: TATC_HELPJ (Sec-independent protein translocase protein tatC homolog OS=Helicobacter pylori J99 GN=tatC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 40/148 (27.03%), Postives = 76/148 (51.35%), Query Frame = -3
Query:  263 LLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXVTSDQMLSIWRYXXXXXXXXXXVLTPSTDPVTQMLLAAPLLGLY 706
            +++  P+I +++  F+ PGL + E++ + P V   S +F  G AFSY+V+ P  + +   +   V  +  S   Y  F   L+   G++F++PV+         +T   + + ++Y          ++TP  D V+Q+ +A PL+GLY
Sbjct:   70 IVISMPIIFWQLWLFIAPGLYKNEKKVILPFVFFGSGMFLMGAAFSYYVVFPFIIEYLATFGSDVFAANISASSYVSFFTRLILGFGVAFELPVLAYFLAKVGLITDASLKAYFKYAIVVIFIVAAIITP-PDVVSQIFMALPLVGLY 216          
BLAST of CN188932 vs. ExPASy Swiss-Prot
Match: TATC_MYCTU (Sec-independent protein translocase protein tatC homolog OS=Mycobacterium tuberculosis GN=tatC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 48/145 (33.10%), Postives = 75/145 (51.72%), Query Frame = -3
Query:  275 GLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXVTSDQMLSIWRYXXXXXXXXXXVLTPSTDPVTQMLLAAPL 709
            G++L  PV  Y++ AF+ PGL + ERRF    V+ ++VLF AG   +Y VL+  AL F +     V  +  S D+YF F+L L+   G+SF+ P++         +T +++ S  R           + TP +DP +   L A L
Sbjct:  113 GIVLACPVWFYQLWAFITPGLYQRERRFAVAFVIPAAVLFVAGAVLAYLVLS-KALGFLLTVGSDVQVTALSGDRYFGFLLNLLVVFGVSFEFPLLIVMLNLAGLLTYERLKSWRRGLIFAMFVFAAIFTPGSDPFSMTALGAAL 256          
BLAST of CN188932 vs. ExPASy Swiss-Prot
Match: TATC_MYCLE (Sec-independent protein translocase protein tatC homolog OS=Mycobacterium leprae GN=tatC PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 53/158 (33.54%), Postives = 79/158 (50.00%), Query Frame = -3
Query:  236 GLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXVTSDQMLSIWRYXXXXXXXXXXVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKL 709
            G++L SPV  Y++ AF+ PGL   ERRF    V+ ++VLF  G   +Y VL+  AL F +    GV  +  S D+YF F+L L+   G+SF+ P++         +T  ++ S  R           V TP +DP +   L A L  L      +V+L
Sbjct:  113 GIVLASPVWFYQLWAFITPGLYTKERRFTVAFVVPAAVLFAGGTVLAYLVLS-KALGFLLIVGSGVQVTALSGDRYFGFLLNLLVVFGVSFEFPLLIVMLNIAGLLTYQRLKSWRRGLIFAMFVFAAVFTPGSDPFSMTALGAALTVLLELAIQLVRL 269          
BLAST of CN188932 vs. ExPASy Swiss-Prot
Match: TATC_MYCBO (Sec-independent protein translocase protein tatC homolog OS=Mycobacterium bovis GN=tatC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 48/145 (33.10%), Postives = 75/145 (51.72%), Query Frame = -3
Query:  275 GLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXVTSDQMLSIWRYXXXXXXXXXXVLTPSTDPVTQMLLAAPL 709
            G++L  PV  Y++ AF+ PGL + ERRF    V+ ++VLF AG   +Y VL+  AL F +     V  +  S D+YF F+L L+   G+SF+ P++         +T +++ S  R           + TP +DP +   L A L
Sbjct:  113 GIVLACPVWFYQLWAFITPGLYQRERRFAVAFVIPAAVLFVAGAVLAYLVLS-KALGFLLTVGSDVQVTALSGDRYFGFLLNLLVVFGVSFEFPLLIVMLNLAGLLTYERLKSWRRGLIFAMFVFAAIFTPGSDPFSMTALGAAL 256          
The following BLAST results are available for this feature:
BLAST of CN188932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
Y1267_AQUAE5.621e-1832.52Uncharacterized protein aq_1267 OS=Aquifex aeolicu... [more]
TATC_AZOCH2.789e-1734.84Sec-independent protein translocase protein tatC h... [more]
TATCY_BACSU1.172e-1535.33Sec-independent protein translocase protein tatCy ... [more]
TATC_HAEIN5.816e-1530.41Sec-independent protein translocase protein tatC O... [more]
YDIJ_BACHD3.770e-1430.00Uncharacterized protein BH0553 OS=Bacillus halodur... [more]
TATC_HELPY1.097e-1327.03Sec-independent protein translocase protein tatC h... [more]
TATC_HELPJ1.097e-1327.03Sec-independent protein translocase protein tatC h... [more]
TATC_MYCTU1.433e-1333.10Sec-independent protein translocase protein tatC h... [more]
TATC_MYCLE1.433e-1333.54Sec-independent protein translocase protein tatC h... [more]
TATC_MYCBO1.433e-1333.10Sec-independent protein translocase protein tatC h... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188932 ID=CN188932; Name=CN188932; organism=Citrus sinensis; type=EST; length=717bp
CTTTTTTTTATTCATCACATCACTGTCATTGCATCTATAGATAAAACACA
TACAATTATGGTACAAATCACATAGATAATTGATGTGGATGATACTCCTT
TCCTTTGTTAAGTTGTTACTTCTATGTTACATTTTCTGAGAATATACAAG
AGTCATGCGCGCCCTTCAAATGTGCGGGCCGCTGCAAACAAATTGGTTGA
ACTGAAAGCAGTGGAAAAATCACTTAACGTCCCGTAAGCTTAACCATCCA
TGCACCACCAAAATAAAGACCGAGAAGCGGTGCTGCTAGAAGCATCTGAG
TAACAGGATCAGTTGACGGTGTAAGTACAGCAGCCGCAATGACTGCCCCA
ACCACAACATATCGCCAGATCGATAACATTTGGTCACTTGTCACTAACCC
AACTTGTCCCAACAGAAGTTGTATAACTGGAACCTGGAAAGACAAGCCTG
TGCTGAACATGAGCACAAGTACAAACTCAAAGTATTGATCAATGGACCAC
AAAGACTCCACAACCCCTTCAGCATAATTAACAAAGAAATTTAAGGCCGC
TGGAGTTAGAACCCAGTAGGAGAAGGCAATTCCAGCATAGAAAAGTACTG
AAGAGCCTAAAACGATTGGCCCCAAGAACCTTCTCTCTGCTCTTGTAAGA
CCTGGGAGAACAAAGGCTATTATCTCATAGAGAATTACCGGGCTTCCCAG
AAGAAGACCACAATATC
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