CN188932

Overview
NameCN188932
Unique NameCN188932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7674 contig Csv1_Contig7674:412..1128. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CN188932 vs. ExPASy Swiss-Prot
Match: TATCD_BACSU (Sec-independent protein translocase protein tatCd OS=Bacillus subtilis GN=tatCd PE=1 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 42/150 (28.00%), Postives = 74/150 (49.33%), Query Frame = -3
Query:  263 CGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXVTSDQMLSIWRYXXXXXXXXXXVLTPSTDPVTQMLLAAPLLGLY 712
            C +    PV  Y++  FV P LT+ ER+     + G   LF AGI+F Y+VL P  L+F  + + G  E++++ D+YF F++ L    G  F++P++         +   ++    +           ++TP  D ++  L+  PLL L+
Sbjct:   71 CAIAASIPVAAYQLWRFVAPALTKTERKVTLMYIPGLFALFLAGISFGYFVLFPIVLSFLTHLSSGHFETMFTADRYFRFMVNLSLPFGFLFEMPLVVMFLTRLGILNPYRLAKARKLSYFLLIVVSILITP-PDFISDFLVMIPLLVLF 219          
BLAST of CN188932 vs. ExPASy Swiss-Prot
Match: TATC_CAMJE (Sec-independent protein translocase protein tatC homolog OS=Campylobacter jejuni GN=tatC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 45/154 (29.22%), Postives = 75/154 (48.70%), Query Frame = -3
Query:  263 YCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVES---LWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXVTSDQMLSIWRYXXXXXXXXXXVLTPSTDPVTQMLLAAPLLGLY 715
            +   +   PVI ++   FV PGL   E+R + P V  +S++F  G  F Y+V+ P A  F +N+  G+ E    + +I  Y +F   ++ + GL+F++PVI         +    +   +R            +TP  D ++Q L+A PL GLY
Sbjct:   74 FAAFIFSLPVIFWQFWKFVAPGLYDNEKRLVVPFVSFASIMFAFGACFCYFVVVPLAFKFLINF--GLNEDFNPVITIGTYVDFFTKVVVAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAVLVIFVFSAFMTP-PDVLSQFLMAGPLCGLY 224          
The following BLAST results are available for this feature:
BLAST of CN188932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
TATCD_BACSU9.286e-1328.00Sec-independent protein translocase protein tatCd ... [more]
TATC_CAMJE1.341e-1129.22Sec-independent protein translocase protein tatC h... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188932 ID=CN188932; Name=CN188932; organism=Citrus sinensis; type=EST; length=717bp
CTTTTTTTTATTCATCACATCACTGTCATTGCATCTATAGATAAAACACA
TACAATTATGGTACAAATCACATAGATAATTGATGTGGATGATACTCCTT
TCCTTTGTTAAGTTGTTACTTCTATGTTACATTTTCTGAGAATATACAAG
AGTCATGCGCGCCCTTCAAATGTGCGGGCCGCTGCAAACAAATTGGTTGA
ACTGAAAGCAGTGGAAAAATCACTTAACGTCCCGTAAGCTTAACCATCCA
TGCACCACCAAAATAAAGACCGAGAAGCGGTGCTGCTAGAAGCATCTGAG
TAACAGGATCAGTTGACGGTGTAAGTACAGCAGCCGCAATGACTGCCCCA
ACCACAACATATCGCCAGATCGATAACATTTGGTCACTTGTCACTAACCC
AACTTGTCCCAACAGAAGTTGTATAACTGGAACCTGGAAAGACAAGCCTG
TGCTGAACATGAGCACAAGTACAAACTCAAAGTATTGATCAATGGACCAC
AAAGACTCCACAACCCCTTCAGCATAATTAACAAAGAAATTTAAGGCCGC
TGGAGTTAGAACCCAGTAGGAGAAGGCAATTCCAGCATAGAAAAGTACTG
AAGAGCCTAAAACGATTGGCCCCAAGAACCTTCTCTCTGCTCTTGTAAGA
CCTGGGAGAACAAAGGCTATTATCTCATAGAGAATTACCGGGCTTCCCAG
AAGAAGACCACAATATC
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