CN188928

Overview
NameCN188928
Unique NameCN188928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:240..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 283.108 bits (723), Expect = 1.073e-75
Identity = 134/178 (75.28%), Postives = 157/178 (88.20%), Query Frame = -1
Query:  207 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 740
            ETGV+KPG VVTF P+ +TTEVKS+EMHHE L EA PGDNVGFNVKNV+VKD++RG V  N+K+DP +EAA+FT+QVII+NHPGQIGNGYAPVLDCHTSHIA KF+E+ +KIDRRSGKELEK PK +K+GDA +V+M+P KPM VE F+DY PLGRFAVRDMRQTVAVG+IK V KKD
Sbjct:  256 ETGVMKPGDVVTFAPANVTTEVKSIEMHHEQLAEATPGDNVGFNVKNVSVKDIRRGNVCGNTKNDPPKEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKD 433          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.073e-75
Identity = 135/178 (75.84%), Postives = 159/178 (89.33%), Query Frame = -1
Query:  207 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 740
            ETGV+K GMVVTF P+ +TTEVKSVEMHHE L E LPGDNVGFNVKNV+VKD++RG V S+SK+DPA+EA +FT+QVI++NHPGQIG GYAPVLDCHT+HIA KF+EL+ KIDRRSGK+LE  PKF+K+GD+ +VKMIP+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  266 ETGVIKAGMVVTFAPANVTTEVKSVEMHHEQLVEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.830e-75
Identity = 133/178 (74.72%), Postives = 158/178 (88.76%), Query Frame = -1
Query:  207 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 740
            ETG++KPGMVVTF P  +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VKD++RG V S+SK DPA+EA  F +QVIIMNHPGQI NGY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE+F+DY PLGRFAVRDMRQTVAVGVIK+VEK D
Sbjct:  268 ETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSD 445          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.830e-75
Identity = 136/177 (76.84%), Postives = 155/177 (87.57%), Query Frame = -1
Query:  210 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 740
            ETG+L+PGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  268 ETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.830e-75
Identity = 136/177 (76.84%), Postives = 155/177 (87.57%), Query Frame = -1
Query:  210 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 740
            ETG+L+PGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  268 ETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.830e-75
Identity = 136/177 (76.84%), Postives = 155/177 (87.57%), Query Frame = -1
Query:  210 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 740
            ETG+L+PGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  268 ETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.390e-75
Identity = 137/177 (77.40%), Postives = 156/177 (88.14%), Query Frame = -1
Query:  210 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 740
            ETGVLKPGMVVTF P+ +TTEVKSVEMHHE+L EA PGDNVGFNVKNV+VKD++RG VA +SK+DP  EAANF +QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  268 ETGVLKPGMVVTFAPANVTTEVKSVEMHHESLTEATPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEAANFNAQVIILNHPGQISQGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMRQTVAVGVIKSVEKK 444          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.390e-75
Identity = 139/177 (78.53%), Postives = 155/177 (87.57%), Query Frame = -1
Query:  210 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 740
            ETGVLKPGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPV DCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  268 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVPDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.121e-75
Identity = 136/177 (76.84%), Postives = 155/177 (87.57%), Query Frame = -1
Query:  210 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 740
            ETG+L+PGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  268 ETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CN188928 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.121e-75
Identity = 136/177 (76.84%), Postives = 155/177 (87.57%), Query Frame = -1
Query:  210 ETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 740
            ETG+L+PGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  268 ETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
The following BLAST results are available for this feature:
BLAST of CN188928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_TRYBB1.073e-7575.28Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_ABSGL1.073e-7575.84Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A_CAEEL1.830e-7574.72Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A2_RABIT1.830e-7576.84Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]
EF1A2_HUMAN1.830e-7576.84Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]
EF1A2_BOVIN1.830e-7576.84Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A... [more]
EF1A_DANRE2.390e-7577.40Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A1_HORSE2.390e-7578.53Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]
EF1A2_RAT3.121e-7576.84Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_MOUSE3.121e-7576.84Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A22_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188928 ID=CN188928; Name=CN188928; organism=Citrus sinensis; type=EST; length=740bp
TTTTTTTTTTTTTTTTTATCACTTACCAAAAAAAAACTCTGATATAAAAC
CAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACGAC
AAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAGATAGATCC
CAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGTGACCTTGGCACC
TGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGTCT
GACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGGGTAGTCAGAGAAG
GTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAACCATTCCAGCATC
TCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCC
TATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTG
TGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGTT
CATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGATCAT
CCTTCGAGTTGGAAGCAACAAAACCACGCTTGAGATCCTTGACAGCAACG
TTCTTCACGTTGAAGCCAACATTGTCACCCGGAAGGGCCTCCTGCAGAGC
TTCGTGGTGCATCTCAACAGACTTAACCTCAGTTGTCAATCCAGAGGGGC
CAAATGTCACCACCATACCAGGCTTGAGGACACCGGTCTC
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