CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_MAGSM (Bifunctional protein folD OS=Magnetococcus sp. (strain MC-1) GN=folD PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38
Identity = 89/168 (52.98%), Postives = 112/168 (66.67%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            N+G L     +P F PCTP G +E+L  SGV+  GK+AVVIGRSNIVG P +L+L   HATV+I H+ T +  +    ADIV+AA G AN+V GSW+K GAVV+DVG   ++   D       +L GDV Y      AS ITPVPGGVGPMT+AMLL NT++ AKRA+
Sbjct:  126 NVGRLVTG--DPTFQPCTPWGVMEMLKVSGVDPKGKHAVVIGRSNIVGKPVALMLLAAHATVTICHSRTPDLAETVKRADIVVAAVGRANMVPGSWIKKGAVVIDVG---INRGEDG------KLCGDVDYASCFEHASAITPVPGGVGPMTIAMLLKNTVEGAKRAH 282          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: C1TM_SCHPO (C-1-tetrahydrofolate synthase, mitochondrial OS=Schizosaccharomyces pombe GN=ade9 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38
Identity = 89/168 (52.98%), Postives = 114/168 (67.86%), Query Frame = -1
Query:  151 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYR-LMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 651
            NIG LA     P+  PCTPKG +ELL  + + + G NAVV+GRS+IVG P S LL++ +ATV++ H+ TK+  Q  S AD+VIAA G    VRG WLKPG+VV+DVG   V          G R L+GDV +E A ++AS ITPVPGGVGPMTVAML+ N +++AK A
Sbjct:  158 NIGLLAKNDATPIHYPCTPKGIMELLKDNKISVAGLNAVVLGRSDIVGNPISYLLRKDNATVTVCHSKTKDLIQHISNADLVIAALGKPEFVRGEWLKPGSVVVDVGINAVQ-------RNGKRVLVGDVHFESASKVASSITPVPGGVGPMTVAMLMENIVNAAKIA 318          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_TREDE (Bifunctional protein folD OS=Treponema denticola GN=folD PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.227e-38
Identity = 86/172 (50.00%), Postives = 115/172 (66.86%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G L +      FIPCTP G I LL R+GVE  G   V++GRSNIVG P S+L+     +ATV++ H+ TKN  ++T EADI++AA G    ++   +K GAVV+DVG   +D S   S   G+RL+GDV +E A  +AS ITPVP GVGPMT+AML++NTL +AKR  G
Sbjct:  125 VNVGKLLLG--HDTFIPCTPHGVIHLLKRTGVETKGAKVVIVGRSNIVGKPLSVLMMNKDVNATVTVCHSGTKNLTEVTKEADILVAAMGKPRFIKADMIKKGAVVIDVGVNRIDDSTKKS---GFRLVGDVDFEPACEIASAITPVPKGVGPMTIAMLVANTLIAAKRQNG 291          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PROA2 (Bifunctional protein folD OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=folD PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.227e-38
Identity = 84/172 (48.84%), Postives = 117/172 (68.02%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQR---HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            N+G + +   +  FI CTP G +ELL R  +E  GK+ VV+GRSNIVG P  +L+LQ+    + TV++ H+ T+N  ++T +ADI+IAA G AN +    +KPGAVV+DVG   ++   DPS + G+RL GDV ++    +AS ITPVPGGVGPMT+AMLL NTL S  R++
Sbjct:  125 NVGQMVLGNLDKCFISCTPFGILELLRRYDIETRGKHCVVVGRSNIVGKPMANLMLQKLRETNCTVTVCHSATQNMPELTRQADILIAAIGRANFITREMVKPGAVVIDVGINRIE---DPSRKSGFRLAGDVDFDNVAEMASAITPVPGGVGPMTIAMLLKNTLQSFARSH 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CHLCH (Bifunctional protein folD OS=Chlorobium chlorochromatii (strain CaD3) GN=folD PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.227e-38
Identity = 89/173 (51.45%), Postives = 113/173 (65.32%), Query Frame = -1
Query:  145 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQR---HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 651
            N+G L M   +  F+ CTP G +ELL R  +E  GK+ VV+GRSNIVG P  +L+LQ+    + TV+I H+ T N  + T +ADI+IAA G AN +    +K GAVV+DVG   VD   D S + GYRL+GDV Y     LAS ITPVPGGVGPMT+AMLL NT+ S +R  G
Sbjct:  125 NLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATPNITEFTKQADILIAAIGKANFITADMVKAGAVVIDVGINRVD---DASAKNGYRLVGDVEYAGVSALASAITPVPGGVGPMTIAMLLKNTVQSFQRVNG 294          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PELPB (Bifunctional protein folD OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=folD PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.215e-38
Identity = 88/170 (51.76%), Postives = 114/170 (67.06%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRHHAT---VSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G L M   +  F+ CTP G +ELL R  +E  GK+ VV+GRSNIVG P  +L+LQ+  AT   V+I H+ TKN    T +ADI+IAA G A  +    +KPGAVV+DVG   ++   DPS + GYRL+GDV +E    +AS +TPVPGGVGPMT+AMLL NTL S +R
Sbjct:  125 NLGRLVMGHLDKCFVSCTPYGILELLGRYNIETRGKHCVVVGRSNIVGKPMANLMLQKLDATNCTVTICHSATKNIPFYTLQADILIAAIGKAGFITADMVKPGAVVIDVGINRIE---DPSTKSGYRLVGDVDFEAVSTVASAMTPVPGGVGPMTIAMLLKNTLQSFQR 291          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CHLL2 (Bifunctional protein folD OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=folD PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.215e-38
Identity = 89/171 (52.05%), Postives = 113/171 (66.08%), Query Frame = -1
Query:  151 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRHHAT---VSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 651
            N+G L M   +  F+ CTP G +ELL R  +E  GK+ VV+GRSNIVG P  +L+LQ+  AT   V+I H+ TK+    T +ADI+IAA G A  +    +KPGAVV+DVG   +D   DPS + G RL GDV YE    +AS +TPVPGGVGPMT+AMLL NTL S +RA
Sbjct:  125 NLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLDATNCTVTICHSATKDIPSYTRQADILIAAIGKAGFITADMVKPGAVVIDVGINRID---DPSTKSGSRLAGDVDYEGVSAIASAMTPVPGGVGPMTIAMLLKNTLQSFERA 292          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BREBN (Bifunctional protein folD OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=folD PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.215e-38
Identity = 82/167 (49.10%), Postives = 120/167 (71.86%), Query Frame = -1
Query:  154 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 654
            ++IGN+ + G + + +PCTP G IEL+ R+G ++ GK+AVVIGRSNIVG P SLLLQ+ +ATV++ H+ T+N E+ T +ADI++ A G A+++    +KPGAVV+DVG   ++           +L+GDV ++E   +AS ITPVPGGVGPMT+ MLL NT+ +AK+
Sbjct:  125 ISIGNMVL-GNDTM-LPCTPHGIIELIKRTGTQMAGKHAVVIGRSNIVGKPVSLLLQQENATVTMCHSRTQNLEEYTQKADILVVATGRAHMIGKEHVKPGAVVIDVGVNRIETG---------KLVGDVKFDEVKDVASFITPVPGGVGPMTITMLLKNTVAAAKK 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: C1TC_YEAST (C-1-tetrahydrofolate synthase, cytoplasmic OS=Saccharomyces cerevisiae GN=ADE3 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.190e-38
Identity = 86/186 (46.24%), Postives = 117/186 (62.90%), Query Frame = -1
Query:  118 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKP--------GAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT*LPMHYP 651
            NIG L  +   P F+PCTPKG IELL ++ V I G  +VVIGRS+IVG P + LL+  ++TV+I H+ T++      +ADIV+ A G    V+G W KP          VV+DVGT   +   DPS + G++ +GDV + EA++   +ITPVPGGVGPMTVAML+ NTL +AKR    +  P+  P
Sbjct:  128 NIGELNKKNGHPFFLPCTPKGIIELLHKANVTIEGSRSVVIGRSDIVGSPVAELLKSLNSTVTITHSKTRDIASYLHDADIVVVAIGQPEFVKGEWFKPRDGTSSDKKTVVIDVGT---NYVADPSKKSGFKCVGDVEFNEAIKYVHLITPVPGGVGPMTVAMLMQNTLIAAKRQMEESSKPLQIP 310          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_AZOC5 (Bifunctional protein folD OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=folD PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.390e-38
Identity = 85/170 (50.00%), Postives = 114/170 (67.06%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N G LA+ G + L +PCTP GC+ LL      + G NAVV+GRSNIVG P + LL R   TV+I H+ T++   +  +ADI++AA G   +VRG W+KPGA V+DVG     ++  P  +   RL+GDV YEEA+ +A +ITPVPGGVGPMT+A LL NTL +A+R  G
Sbjct:  127 VNAGRLAV-GLDAL-VPCTPLGCVMLLKHHLGNLSGLNAVVVGRSNIVGKPAAQLLLREDCTVTIAHSRTRDLPGMCRQADILVAAVGRPEMVRGDWIKPGATVIDVG-----INRVPKADGKTRLVGDVAYEEALGVAGLITPVPGGVGPMTIACLLQNTLTAARRQKG 289          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_MAGSM2.471e-3852.98Bifunctional protein folD OS=Magnetococcus sp. (st... [more]
C1TM_SCHPO2.471e-3852.98C-1-tetrahydrofolate synthase, mitochondrial OS=Sc... [more]
FOLD_TREDE3.227e-3850.00Bifunctional protein folD OS=Treponema denticola G... [more]
FOLD_PROA23.227e-3848.84Bifunctional protein folD OS=Prosthecochloris aest... [more]
FOLD_CHLCH3.227e-3851.45Bifunctional protein folD OS=Chlorobium chlorochro... [more]
FOLD_PELPB4.215e-3851.76Bifunctional protein folD OS=Pelodictyon phaeoclat... [more]
FOLD_CHLL24.215e-3852.05Bifunctional protein folD OS=Chlorobium limicola (... [more]
FOLD_BREBN4.215e-3849.10Bifunctional protein folD OS=Brevibacillus brevis ... [more]
C1TC_YEAST7.190e-3846.24C-1-tetrahydrofolate synthase, cytoplasmic OS=Sacc... [more]
FOLD_AZOC59.390e-3850.00Bifunctional protein folD OS=Azorhizobium caulinod... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
back to top