CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_ZYMMO (Bifunctional protein folD OS=Zymomonas mobilis GN=folD PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.226e-37
Identity = 84/167 (50.30%), Postives = 113/167 (67.66%), Query Frame = -1
Query:  157 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG-YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 654
            +N G LA+    P  +PCTP GC+ LL  S   + GKNA+VIGRS IVG P + LL     TV++ H  TKN E++  +ADIV+AA G+ + V+ SWLKPGAVV+DVG   V    + +   G  R++GDV + EA ++AS ITPVPGGVGPMT+A LL+NT+ +A+
Sbjct:  127 VNAGRLAIG--TPSLVPCTPAGCMMLLEHSLGSLKGKNALVIGRSTIVGRPMAQLLLAADCTVTVAHRHTKNLEELCRQADIVVAAVGIPHFVKASWLKPGAVVIDVGINRVPAEDEAAKAAGKTRIVGDVDFVEAAKVASAITPVPGGVGPMTIACLLNNTVQAAR 291          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_LISW6 (Bifunctional protein folD OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=folD PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.226e-37
Identity = 82/169 (48.52%), Postives = 115/169 (68.05%), Query Frame = -1
Query:  148 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 654
            +N+GNL + G++  F+PCTP G IEL+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TKN  ++  EADI++ A G+A  V+  ++KPGA+V+DVG            +   +L GDV +++ +  A  ITPVPGGVGPMT+ MLL+NTL +AKR +
Sbjct:  124 VNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKNLPEVAKEADILVVATGLAKFVKKEYIKPGAIVIDVGM---------DRDENNKLCGDVDFDDVIEEAGFITPVPGGVGPMTITMLLANTLKAAKRIW 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CLOTH (Bifunctional protein folD OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=folD PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.226e-37
Identity = 79/166 (47.59%), Postives = 113/166 (68.07%), Query Frame = -1
Query:  157 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 654
            +N+G L +    P F+PCTP G +EL+  SG++I GK  VV+GRSNIVG P ++LL   + TV++ H+ T+N +++   ADI++ A G    ++GS +KPGAVV+DVG   ++           +L+GDV YE A R+AS ITPVPGGVGPMT+AML+ NT+ +AK
Sbjct:  125 VNVGKLMIGN--PDFLPCTPAGVMELIKESGIDITGKECVVVGRSNIVGKPMAMLLLAQNGTVTVCHSRTQNIDEVCKRADILVVAVGKPEFIKGSSIKPGAVVIDVGINRLE---------NKKLVGDVEYESASRVASAITPVPGGVGPMTIAMLMKNTVKAAK 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_LISMO (Bifunctional protein folD OS=Listeria monocytogenes GN=folD PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.602e-37
Identity = 82/169 (48.52%), Postives = 116/169 (68.64%), Query Frame = -1
Query:  148 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 654
            +N+GNL + G++  F+PCTP G IEL+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ A G+A  V+  ++KPGA+V+DVG            +   +L GDV +++ ++ A  ITPVPGGVGPMT+ MLL+NTL +AKR +
Sbjct:  124 VNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGM---------DRDENNKLCGDVDFDDVVQEAGFITPVPGGVGPMTITMLLANTLKAAKRIW 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_LISMC (Bifunctional protein folD OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=folD PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.602e-37
Identity = 83/169 (49.11%), Postives = 115/169 (68.05%), Query Frame = -1
Query:  148 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 654
            +N+GNL + G++  F+PCTP G IEL+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ A G+A  V+  ++KPGAVV+DVG            +   +L GDV +++ +  A  ITPVPGGVGPMT+ MLL+NTL +AKR +
Sbjct:  124 VNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAVVIDVGM---------DRDENNKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIW 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_PSEMY (Bifunctional protein folD 2 OS=Pseudomonas mendocina (strain ymp) GN=folD2 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.602e-37
Identity = 88/176 (50.00%), Postives = 119/176 (67.61%), Query Frame = -1
Query:  127 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG-YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT*LPM 651
            N+G L+ +GR+ L  PCTP GC+ LL  S  ++ GK+AVVIGRSNIVG P + LL + H +VS+VH+ + N  ++  +ADIV+AA G   LV   WLKPGAVV+DVG   +D       E G  RL+GDV ++ A+  A+ ITPVPGGVGPMT+A L+ NTL +A+  +  T LP+
Sbjct:  130 NVGGLS-QGRDVL-TPCTPAGCLRLLQDSCGDLTGKHAVVIGRSNIVGKPMAALLLKAHCSVSVVHSKSANLRELCRQADIVVAAVGKPRLVDADWLKPGAVVIDVGINRID-------EGGRSRLVGDVDFDSALTRAAAITPVPGGVGPMTIAFLMKNTLVAARLQHPATGLPL 296          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_LISMH (Bifunctional protein folD OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=folD PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.092e-37
Identity = 82/169 (48.52%), Postives = 115/169 (68.05%), Query Frame = -1
Query:  148 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 654
            +N+GNL + G++  F+PCTP G IEL+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ A G+A  V+  ++KPGA+V+DVG            +   +L GDV +++ +  A  ITPVPGGVGPMT+ MLL+NTL +AKR +
Sbjct:  124 VNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGM---------DRDENNKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIW 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PROVI (Bifunctional protein folD OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=folD PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.732e-37
Identity = 86/172 (50.00%), Postives = 113/172 (65.70%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLL----LQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            N+G L M   +  F+ CTP G +ELL R G+E  GK+ VV+GRSNIVG P + L    L+R + TV+I H+ T++    T +ADI+IAA G A  +    +K GAVV+DVG   +D   DP+ + G RL+GDV YE    LAS +TPVPGGVGPMT+AMLL NTL S +R +
Sbjct:  125 NLGRLVMGHLDKCFVSCTPYGILELLGRYGIETSGKHCVVVGRSNIVGKPMANLMLQKLKRSNCTVTICHSATQDIASYTRQADILIAAIGRAKFITPDMVKEGAVVIDVGINRID---DPTTKSGTRLVGDVDYEGVSALASAMTPVPGGVGPMTIAMLLKNTLHSFERTH 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_LISIN (Bifunctional protein folD OS=Listeria innocua GN=folD PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.732e-37
Identity = 82/169 (48.52%), Postives = 114/169 (67.46%), Query Frame = -1
Query:  148 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 654
            +N+GNL + G++  F+PCTP G IEL+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ A G+A  V+  ++KPGA+V+DVG            +   +L GDV +++    A  ITPVPGGVGPMT+ MLL+NTL +AKR +
Sbjct:  124 VNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKEYIKPGAIVIDVGM---------DRDENNKLCGDVDFDDVKEQAGFITPVPGGVGPMTITMLLANTLKAAKRIW 281          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_LISMF (Bifunctional protein folD OS=Listeria monocytogenes serotype 4b (strain F2365) GN=folD PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.568e-37
Identity = 83/169 (49.11%), Postives = 115/169 (68.05%), Query Frame = -1
Query:  148 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 654
            +N+GNL + G++  F+PCTP G IEL+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ A G+A  V+  ++KPGAVV+DVG            +   +L GDV +++ +  A  ITPVPGGVGPMT+ MLL+NTL +AKR +
Sbjct:  124 VNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLIENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAVVIDVGM---------DRDENNKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIW 281          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_ZYMMO1.226e-3750.30Bifunctional protein folD OS=Zymomonas mobilis GN=... [more]
FOLD_LISW61.226e-3748.52Bifunctional protein folD OS=Listeria welshimeri s... [more]
FOLD_CLOTH1.226e-3747.59Bifunctional protein folD OS=Clostridium thermocel... [more]
FOLD_LISMO1.602e-3748.52Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD_LISMC1.602e-3749.11Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD2_PSEMY1.602e-3750.00Bifunctional protein folD 2 OS=Pseudomonas mendoci... [more]
FOLD_LISMH2.092e-3748.52Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD_PROVI2.732e-3750.00Bifunctional protein folD OS=Prosthecochloris vibr... [more]
FOLD_LISIN2.732e-3748.52Bifunctional protein folD OS=Listeria innocua GN=f... [more]
FOLD_LISMF3.568e-3749.11Bifunctional protein folD OS=Listeria monocytogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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