CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BRUSU (Bifunctional protein folD OS=Brucella suis GN=folD PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 84/174 (48.28%), Postives = 115/174 (66.09%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G L     E  F+PCTP G + ++ R  G ++ G NAVVIGRSNIVG P   LL   +ATV++ H+ TK+   I   ADI++AA G   +V+G W+KPGA V+DVG     ++  P+ E G    RL+GDV + EA ++A  ITPVPGGVGPMT+AML++NTL +A R+ G
Sbjct:  125 INVGKLGTGEVETAFVPCTPAGAMIMIERVHGRDLSGLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVG-----INRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACRSAG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BRUSI (Bifunctional protein folD OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=folD PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 84/174 (48.28%), Postives = 115/174 (66.09%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G L     E  F+PCTP G + ++ R  G ++ G NAVVIGRSNIVG P   LL   +ATV++ H+ TK+   I   ADI++AA G   +V+G W+KPGA V+DVG     ++  P+ E G    RL+GDV + EA ++A  ITPVPGGVGPMT+AML++NTL +A R+ G
Sbjct:  125 INVGKLGTGEVETAFVPCTPAGAMIMIERVHGRDLSGLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVG-----INRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACRSAG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BRUO2 (Bifunctional protein folD OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=folD PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 84/174 (48.28%), Postives = 115/174 (66.09%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G L     E  F+PCTP G + ++ R  G ++ G NAVVIGRSNIVG P   LL   +ATV++ H+ TK+   I   ADI++AA G   +V+G W+KPGA V+DVG     ++  P+ E G    RL+GDV + EA ++A  ITPVPGGVGPMT+AML++NTL +A R+ G
Sbjct:  125 INVGKLGTGEVETAFVPCTPAGAMIMIERVHGRDLSGLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVG-----INRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACRSAG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BRUME (Bifunctional protein folD OS=Brucella melitensis GN=folD PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 84/174 (48.28%), Postives = 115/174 (66.09%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G L     E  F+PCTP G + ++ R  G ++ G NAVVIGRSNIVG P   LL   +ATV++ H+ TK+   I   ADI++AA G   +V+G W+KPGA V+DVG     ++  P+ E G    RL+GDV + EA ++A  ITPVPGGVGPMT+AML++NTL +A R+ G
Sbjct:  125 INVGKLGTGEVETAFVPCTPAGAMIMIERVHGRDLSGLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVG-----INRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACRSAG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BRUMB (Bifunctional protein folD OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=folD PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 84/174 (48.28%), Postives = 115/174 (66.09%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G L     E  F+PCTP G + ++ R  G ++ G NAVVIGRSNIVG P   LL   +ATV++ H+ TK+   I   ADI++AA G   +V+G W+KPGA V+DVG     ++  P+ E G    RL+GDV + EA ++A  ITPVPGGVGPMT+AML++NTL +A R+ G
Sbjct:  125 INVGKLGTGEVETAFVPCTPAGAMIMIERVHGRDLSGLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVG-----INRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACRSAG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BRUC2 (Bifunctional protein folD OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=folD PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 84/174 (48.28%), Postives = 115/174 (66.09%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G L     E  F+PCTP G + ++ R  G ++ G NAVVIGRSNIVG P   LL   +ATV++ H+ TK+   I   ADI++AA G   +V+G W+KPGA V+DVG     ++  P+ E G    RL+GDV + EA ++A  ITPVPGGVGPMT+AML++NTL +A R+ G
Sbjct:  125 INVGKLGTGEVETAFVPCTPAGAMIMIERVHGRDLSGLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVG-----INRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACRSAG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BRUAB (Bifunctional protein folD OS=Brucella abortus GN=folD PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 84/174 (48.28%), Postives = 115/174 (66.09%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G L     E  F+PCTP G + ++ R  G ++ G NAVVIGRSNIVG P   LL   +ATV++ H+ TK+   I   ADI++AA G   +V+G W+KPGA V+DVG     ++  P+ E G    RL+GDV + EA ++A  ITPVPGGVGPMT+AML++NTL +A R+ G
Sbjct:  125 INVGKLGTGEVETAFVPCTPAGAMIMIERVHGRDLSGLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVG-----INRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACRSAG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BRUA2 (Bifunctional protein folD OS=Brucella abortus (strain 2308) GN=folD PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 84/174 (48.28%), Postives = 115/174 (66.09%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G L     E  F+PCTP G + ++ R  G ++ G NAVVIGRSNIVG P   LL   +ATV++ H+ TK+   I   ADI++AA G   +V+G W+KPGA V+DVG     ++  P+ E G    RL+GDV + EA ++A  ITPVPGGVGPMT+AML++NTL +A R+ G
Sbjct:  125 INVGKLGTGEVETAFVPCTPAGAMIMIERVHGRDLSGLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVG-----INRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACRSAG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BRUA1 (Bifunctional protein folD OS=Brucella abortus (strain S19) GN=folD PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 84/174 (48.28%), Postives = 115/174 (66.09%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G L     E  F+PCTP G + ++ R  G ++ G NAVVIGRSNIVG P   LL   +ATV++ H+ TK+   I   ADI++AA G   +V+G W+KPGA V+DVG     ++  P+ E G    RL+GDV + EA ++A  ITPVPGGVGPMT+AML++NTL +A R+ G
Sbjct:  125 INVGKLGTGEVETAFVPCTPAGAMIMIERVHGRDLSGLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVG-----INRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACRSAG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD3_PSEMY (Bifunctional protein folD 3 OS=Pseudomonas mendocina (strain ymp) GN=folD3 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.729e-36
Identity = 85/166 (51.20%), Postives = 113/166 (68.07%), Query Frame = -1
Query:  157 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG-YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 651
            N+G L+ +GRE L  PCTP GC+ LL  S  ++ GK+AVVIGRSNIVG P + LL + H +V++VH+ + N + +  +ADIV+AA G   LV   WLKPGAVV+DVG   +D       E G  RL+GDV ++ A+   S ITPVPGGVGPMT+A L+ NTL +A+
Sbjct:  130 NVGGLS-QGREVL-TPCTPAGCLRLLQDSCGDLTGKHAVVIGRSNIVGKPMAALLLKAHCSVTVVHSKSANLKTLCRQADIVVAAVGRPRLVDADWLKPGAVVIDVGINRID-------ENGRSRLVGDVDFDSALPQVSAITPVPGGVGPMTIAYLMKNTLVAAR 286          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_BRUSU5.153e-3648.28Bifunctional protein folD OS=Brucella suis GN=folD... [more]
FOLD_BRUSI5.153e-3648.28Bifunctional protein folD OS=Brucella suis (strain... [more]
FOLD_BRUO25.153e-3648.28Bifunctional protein folD OS=Brucella ovis (strain... [more]
FOLD_BRUME5.153e-3648.28Bifunctional protein folD OS=Brucella melitensis G... [more]
FOLD_BRUMB5.153e-3648.28Bifunctional protein folD OS=Brucella melitensis b... [more]
FOLD_BRUC25.153e-3648.28Bifunctional protein folD OS=Brucella canis (strai... [more]
FOLD_BRUAB5.153e-3648.28Bifunctional protein folD OS=Brucella abortus GN=f... [more]
FOLD_BRUA25.153e-3648.28Bifunctional protein folD OS=Brucella abortus (str... [more]
FOLD_BRUA15.153e-3648.28Bifunctional protein folD OS=Brucella abortus (str... [more]
FOLD3_PSEMY6.729e-3651.20Bifunctional protein folD 3 OS=Pseudomonas mendoci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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