CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SHEPA (Bifunctional protein folD OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=folD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 73/161 (45.34%), Postives = 96/161 (59.63%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            N+G LA R   P+   CTP G + LL  +GV+  G +AVV+G SNIVG P SL L     T +  H  T+N E     AD+V+ A G    + G W+KPGA+V+DVG   ++           +L+GDV ++ A + AS ITPVPGGVGPMT+A LL NTL
Sbjct:  127 NVGRLAQR--IPVLRSCTPMGIMTLLKSTGVDTFGLDAVVVGASNIVGRPMSLELLLAGCTTTTCHRFTRNLEDKVRSADLVVVAVGKPGFIPGDWIKPGAIVIDVGINRLESG---------QLVGDVEFDVASQHASFITPVPGGVGPMTIASLLENTL 276          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SHEDO (Bifunctional protein folD OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=folD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 71/165 (43.03%), Postives = 99/165 (60.00%), Query Frame = -1
Query:  157 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 651
            N+G LA R   P+  PCTP G + L+  +GV+  G +A ++G SNIVG P +L L     T +  H  TKN EQ   +AD+++ A G    + G W+KPGA+V+DVG   ++            L+GDV ++ A + A  ITPVPGGVGPMT+A LL NTL +A+
Sbjct:  127 NVGRLAQR--IPVLRPCTPLGIMTLIKSTGVDTYGLDATIVGASNIVGRPMTLELLLAGCTTTTCHRFTKNLEQKVRQADLLVVAVGKPGFILGEWIKPGAIVIDVGINRLE---------NGSLVGDVEFDAASQHAGFITPVPGGVGPMTIACLLENTLYAAE 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_ROSCS (Bifunctional protein folD OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=folD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 75/165 (45.45%), Postives = 104/165 (63.03%), Query Frame = -1
Query:  157 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 651
            N G LAM   +P  +P TP G +ELL+R+ + I G+ A V+GRS +VG P +LLL + HATV+I H+ TK+   +  EADIV+AA G   L+    ++PGAVV+D G   V+V  D       +++GDV +     +AS ITPVPGG GP+T  MLL N L +A+
Sbjct:  127 NAGLLAMG--QPTMVPNTPAGGMELLLRNHILIKGQRATVVGRSVVVGKPMALLLLQEHATVTIAHSRTKDLASVVREADIVVAATGKPGLITADMVRPGAVVVDFG---VNVLGDG------KVVGDVDFAGVAEIASAITPVPGGTGPVTNIMLLRNVLRAAR 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_METFK (Bifunctional protein folD OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=folD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 76/161 (47.20%), Postives = 103/161 (63.98%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            NIG LA+R  +P    CTP G I+LL  +GV ++G +AVV+G SN VG P +L L     TV+  H  TK+ +   + ADIV+AA G  +L++G W+KPGA+V+D+G   ++   D S      L GDV ++ A   A+ ITPVPGGVGPMTVA L+ NTL
Sbjct:  127 NIGRLAVR--QPTLRSCTPYGVIKLLQSTGVRLLGLDAVVVGVSNHVGRPMALELLLAGCTVTSCHRHTKDLQASIARADIVVAAVGKPHLIKGEWIKPGAIVIDIG---INRLADGS------LCGDVEFDIAKTRAAWITPVPGGVGPMTVATLMQNTL 276          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_GLOVI (Bifunctional protein folD OS=Gloeobacter violaceus GN=folD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 76/167 (45.51%), Postives = 105/167 (62.87%), Query Frame = -1
Query:  154 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 654
            +N+G L +RG EP    CTP G + +L  +GV + GK AVVIGRS +VG P +L+L    ATV   H+ T +   IT  AD+++ AAG   LV  + ++PGAVV+DVG     ++     E   RL+GDV ++    +A+ ITPVP GVGPMTV MLL+NT+ S K+
Sbjct:  127 VNLGRL-VRG-EPGLRSCTPAGVMRILSEAGVPLAGKTAVVIGRSILVGKPVALMLLEKDATVITTHSRTADLAAITQMADVLVVAAGRPELVTAAMVRPGAVVIDVG-----INRVTDYEGNSRLVGDVDFDSVRDVAAAITPVPRGVGPMTVTMLLANTVQSYKQ 286          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_ANASP (Bifunctional protein folD OS=Anabaena sp. (strain PCC 7120) GN=folD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 75/164 (45.73%), Postives = 105/164 (64.02%), Query Frame = -1
Query:  163 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 654
            +N+G L +RG + L   CTP G + LL    + + GK AVV+GRS +VG P +L+L    ATV+I H+ +++ + IT  ADI+IAAAG+  L+    +KPGAVV+DVG   V  +   S     RL+GD+ +     +A  ITPVPGG+GPMTVA+LL NT+ S
Sbjct:  129 VNLGRL-VRGEKGLR-SCTPAGVMRLLAEYEISLRGKQAVVVGRSILVGKPMALMLLEADATVTIAHSRSQDLKSITQNADILIAAAGLPGLITADMVKPGAVVVDVGINRVSDAHGKS-----RLVGDINFASIAGVAEYITPVPGGIGPMTVALLLQNTVTS 285          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: MTDC_CHICK (Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial OS=Gallus gallus GN=MTHFD2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.605e-29
Identity = 78/177 (44.07%), Postives = 107/177 (60.45%), Query Frame = -1
Query:  154 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ---RHH-----ATVSIVHALTKNPE--QITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 654
            +N+G + +   +   +P TP G  E++ R+G+  +GKN VV GRS  VG+P ++LL    RH      ATV+I H  T   +  Q T  ADIV+AAAG+ NL+    +K GA V+DVG   V   +        RL+GDV +E   + AS ITPVPGGVGPMTVAML+ NT+ +AK+
Sbjct:  155 INVGRMCLD--QYSMLPATPWGVWEIIKRTGIPTLGKNVVVAGRSKNVGMPIAMLLHTDGRHERPGGDATVTISHRYTPKEQLKQHTIRADIVVAAAGIPNLITADMIKEGAAVIDVGITRVQDPITAKS----RLVGDVDFEGVKKKASYITPVPGGVGPMTVAMLMKNTIIAAKK 325          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_VIBVY (Bifunctional protein folD OS=Vibrio vulnificus (strain YJ016) GN=folD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.605e-29
Identity = 72/161 (44.72%), Postives = 96/161 (59.63%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            N+G LA R   P    CTPKG I LL R  + + GK+AV++G SNIVG P +L L     T +  H  TK+ E    +AD+++ A G  N + G W+K GA+V+DVG   ++           +L+GDV Y +A   AS ITPVPGGVGPMTVA L+ NT+
Sbjct:  127 NVGRLAQR--IPKLRSCTPKGIITLLERYNIALRGKHAVIVGASNIVGRPMTLELLLAGCTTTTCHRFTKDLEGHVRQADVLVVAVGKPNFIPGEWVKEGAIVVDVGINRLESG---------KLIGDVEYNKARERASFITPVPGGVGPMTVASLIENTM 276          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_VIBVU (Bifunctional protein folD OS=Vibrio vulnificus GN=folD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.605e-29
Identity = 72/161 (44.72%), Postives = 96/161 (59.63%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            N+G LA R   P    CTPKG I LL R  + + GK+AV++G SNIVG P +L L     T +  H  TK+ E    +AD+++ A G  N + G W+K GA+V+DVG   ++           +L+GDV Y +A   AS ITPVPGGVGPMTVA L+ NT+
Sbjct:  127 NVGRLAQR--IPKLRSCTPKGIITLLERYNIALRGKHAVIVGASNIVGRPMTLELLLAGCTTTTCHRFTKDLEGHVRQADVLVVAVGKPNFIPGEWVKEGAIVVDVGINRLESG---------KLIGDVEYNKARERASFITPVPGGVGPMTVASLIENTM 276          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_POLSQ (Bifunctional protein folD OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=folD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.605e-29
Identity = 71/157 (45.22%), Postives = 100/157 (63.69%), Query Frame = -1
Query:  151 EPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 621
            +P FIPCTP GC++LL      I G  AV++G SNIVG P ++LL +  ATV+I ++ T++    T +ADI++ A G   +V G  +K GAVV+DVG   +            +L GDV ++ A  +A  ITPVPGGVGPMT+ MLL NTL++A++A
Sbjct:  134 KPEFIPCTPYGCMKLLESIEYPIRGARAVIVGASNIVGKPMAMLLLQAGATVTICNSKTRDLAHHTKDADILVVATGKPKMVSGDMIKNGAVVIDVGINRLPDG---------KLCGDVDFDAAKYVAGWITPVPGGVGPMTITMLLMNTLEAAEKA 281          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_SHEPA1.229e-2945.34Bifunctional protein folD OS=Shewanella pealeana (... [more]
FOLD_SHEDO1.229e-2943.03Bifunctional protein folD OS=Shewanella denitrific... [more]
FOLD_ROSCS1.229e-2945.45Bifunctional protein folD OS=Roseiflexus castenhol... [more]
FOLD_METFK1.229e-2947.20Bifunctional protein folD OS=Methylobacillus flage... [more]
FOLD_GLOVI1.229e-2945.51Bifunctional protein folD OS=Gloeobacter violaceus... [more]
FOLD_ANASP1.229e-2945.73Bifunctional protein folD OS=Anabaena sp. (strain ... [more]
MTDC_CHICK1.605e-2944.07Bifunctional methylenetetrahydrofolate dehydrogena... [more]
FOLD_VIBVY1.605e-2944.72Bifunctional protein folD OS=Vibrio vulnificus (st... [more]
FOLD_VIBVU1.605e-2944.72Bifunctional protein folD OS=Vibrio vulnificus GN=... [more]
FOLD_POLSQ1.605e-2945.22Bifunctional protein folD OS=Polynucleobacter sp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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