CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_DICNV (Bifunctional protein folD OS=Dichelobacter nodosus (strain VCS1703A) GN=folD PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.789e-36
Identity = 85/167 (50.90%), Postives = 107/167 (64.07%), Query Frame = -1
Query:  157 LNIGNLAMRGREPLFIPCTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 654
            LNIG L     EP  +PCTP GC  +L R  G  + GK A++IGRSNIVG P + LL + HATV+I H+ T +   +  +ADIVIAA G   LV+G W+K GAVVLDVG   + V          +L+GDV +E A  +A+ ITPVPGG+GPMT+A LL NTL  AK
Sbjct:  126 LNIGRLW--AGEPCSVPCTPLGCSLILKRYFGDSLAGKKALIIGRSNIVGKPMAALLLQQHATVTIAHSKTPDVPALCRQADIVIAAVGQPELVKGDWIKSGAVVLDVGINRIAVGDKT------KLVGDVAFESAKEVAAAITPVPGGIGPMTIACLLKNTLTLAK 284          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_DESPS (Bifunctional protein folD OS=Desulfotalea psychrophila GN=folD PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 8.789e-36
Identity = 82/169 (48.52%), Postives = 109/169 (64.50%), Query Frame = -1
Query:  160 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 654
            +NIG L + G +  F+PCTP G  E+L+RSGVE  G   VV+GRSNIVG P ++++ +     +ATV+IVH  +++       ADI+I AAGV NLV+  W+KPGA V+DVG   V  + +        L GDV +E    +A  ITPVPGGVGPMT+AML+ NTL SA
Sbjct:  126 VNIGRLMIGGDDVKFLPCTPAGIQEMLVRSGVETAGAEVVVVGRSNIVGKPIAMMMAQKGIGANATVTIVHTGSRDLATHCRRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRVGTNSETGKAI---LRGDVDFEAVKEIAGKITPVPGGVGPMTIAMLMKNTLASA 291          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_OCHA4 (Bifunctional protein folD OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=folD PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.148e-35
Identity = 84/174 (48.28%), Postives = 114/174 (65.52%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G L     E  F+PCTP G + ++ R  G ++ G NAVVIGRSNIVG P   LL   +ATV++ H+ TK+   I   ADI++AA G   +V+G W+KPGA V+DVG     ++  P+ E G    RL+GDV + EA ++A  ITPVPGGVGPMT+AML++NTL +A R  G
Sbjct:  125 INVGKLGTGEVETAFVPCTPAGAMIMIERIHGRDLSGLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARTADILVAAVGRPQMVKGDWVKPGATVIDVG-----INRIPAPERGEGRTRLVGDVDFVEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACRTAG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_MOOTA (Bifunctional protein folD OS=Moorella thermoacetica (strain ATCC 39073) GN=folD PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.148e-35
Identity = 80/166 (48.19%), Postives = 110/166 (66.27%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+GNL +  +   F PCTP GC+ LL ++G++  GK AVV+GRSNIVG P +++L   HATV+I H+ T++      +ADI+IAA G   L+ G  +K GAVV+DVG   V            +L+GDV +E A + A  ITPVPGGVGPMT+AMLL NT+++A+R
Sbjct:  126 NVGNLVIGDK--CFYPCTPHGCMVLLEKAGIDPKGKKAVVVGRSNIVGKPVAMMLLARHATVTICHSRTRDLAAECRQADILIAAVGKPELITGDMIKEGAVVIDVGINRVGEK---------KLVGDVHFESAAQKAGWITPVPGGVGPMTIAMLLKNTVEAARR 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_FLAPJ (Bifunctional protein folD OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=folD PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.148e-35
Identity = 85/165 (51.52%), Postives = 111/165 (67.27%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            N G +A+      FIP TP G +ELL R GVE  GK+ VVIGRS+IVG P S+L+ R     ++TV++ H+ TKN  QIT++ADI+I+A GV N ++   +K GAV++DVG   V    D + E GY + GDV +E   + AS ITPVPGGVGPMT+AMLL NTL
Sbjct:  125 NFGKMALD--MTTFIPATPFGILELLERYGVETKGKHTVVIGRSHIVGRPMSILMGRKGFPGNSTVTLTHSYTKNIAQITTQADIIISALGVPNYLKAEMVKDGAVIIDVGITRVP---DETNEKGYVITGDVDFENVSKKASHITPVPGGVGPMTIAMLLKNTL 284          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_DESOH (Bifunctional protein folD OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=folD PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.148e-35
Identity = 85/177 (48.02%), Postives = 113/177 (63.84%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQR---HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPV---DVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G L + G E  F PCTP G  E+++R+GVE  G   VV+GRSNIVG P  +++LQ+    +ATV++VH  TKN ++    ADI+I AAGV  LV+  W+KPGA V+DVG   V     + DP+      L GDV ++ A  +A  ITPVPGGVGPMT+ ML+ NTL S K   G
Sbjct:  126 VNVGRLMIGGSEVKFPPCTPAGIQEMIVRAGVETSGAEVVVVGRSNIVGKPIANMMLQKGPGANATVTVVHTRTKNMDEHCKRADILIVAAGVPGLVKPEWIKPGACVIDVGVNRVGEKPSAKDPNKMVAI-LSGDVDFDAAKEIAGSITPVPGGVGPMTITMLMLNTLKSLKFKLG 301          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD3_SPHWW (Bifunctional protein folD 3 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=folD3 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.148e-35
Identity = 83/171 (48.54%), Postives = 111/171 (64.91%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG-YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N G LA+   E  ++PCTP GC+ LL     ++ G  AVVIGRSNIVG P + LL   + TV+I H+ T++  ++   ADIV+AA G   +VRG W++PGA V+DVG     ++  P  E G  RL+GDV + EA  +A  ITPVPGGVGPMT+A+LL NTL +A R  G
Sbjct:  132 VNAGRLAVG--EAGYVPCTPLGCLMLLKDRRGDLSGLEAVVIGRSNIVGKPMAALLLAENCTVTIAHSRTRDLAEVVRRADIVVAAVGRPEMVRGDWIRPGATVIDVG-----INRVPGAEPGKTRLVGDVAFAEAAAVAGAITPVPGGVGPMTIAVLLRNTLVAAHRRAG 295          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_PARL1 (Bifunctional protein folD OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=folD PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.499e-35
Identity = 84/181 (46.41%), Postives = 118/181 (65.19%), Query Frame = -1
Query:  121 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG---YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT*LPMHY 654
            LN G LA     P  +P TP+GC+ +  R+G ++ GK+AV+IGRSN+VG P + LL + + TV+I H+ +++   I  +ADI++AA G   +VRG W+KPGAVV+DVG     ++  P+ E G    RL+GDV ++EA  +A  ITPVPGGVG MTVA LL NT+ +A R  G   LP  +
Sbjct:  126 LNAGRLA--SGLPAMVPATPEGCVIMAKRAGGDLSGKHAVIIGRSNLVGKPVAQLLLKENCTVTIAHSRSRDLPSIARQADILVAAVGRPGMVRGDWVKPGAVVIDVG-----INRVPAPEKGEGKTRLVGDVLFDEAAEVAGAITPVPGGVGLMTVACLLRNTVIAACRQNGIA-LPQDF 298          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD1_ACIAD (Bifunctional protein folD 1 OS=Acinetobacter sp. (strain ADP1) GN=folD1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.958e-35
Identity = 83/166 (50.00%), Postives = 113/166 (68.07%), Query Frame = -1
Query:  157 NIGNLAMRGREPLFIPCTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 651
            N+G L+ +GR+ L  PCTP GCI LL  S G ++ G +AVVIGRSNIVG P + LL +   TV++VH+ T+N EQ+  +ADIV+AA G AN++  S+LK  AVV+DVG   +            RL+GDV +E+A+ + S ITPVPGGVGPMT+A L+ NTL + +
Sbjct:  134 NVGGLS-QGRDVL-TPCTPTGCIRLLKDSLGDDLSGLHAVVIGRSNIVGKPMAALLLKESCTVTVVHSKTRNIEQVCQQADIVVAAVGKANMINASYLKADAVVIDVGINRI------MTHEKTRLVGDVDFEDALPMVSAITPVPGGVGPMTIAYLMKNTLQAVR 291          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RHOCS (Bifunctional protein folD OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=folD PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.557e-35
Identity = 83/173 (47.98%), Postives = 113/173 (65.32%), Query Frame = -1
Query:  139 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG-YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 654
            +N G LA+    P  +PCTP GC+ LL     ++ G NAVV+GRSNIVG P + LL + +ATV++ H+ T +  ++   ADI+IAA G   ++RGSW+K GA+V+DVG   V      +   G  R++GDV +EEA  +A  ITPVPGGVGPMT+A LL NTL +A R+ G T
Sbjct:  127 VNAGRLAVG--LPGLVPCTPLGCLMLLKDVVGDLRGLNAVVVGRSNIVGKPMANLLLQANATVTVAHSHTVDLPEVCRGADILIAAVGRPEMIRGSWIKEGAIVIDVGINRVPARDPAAAAAGKTRVVGDVAFEEAKGIAGAITPVPGGVGPMTIACLLLNTLTAACRSKGIT 297          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_DICNV8.789e-3650.90Bifunctional protein folD OS=Dichelobacter nodosus... [more]
FOLD_DESPS8.789e-3648.52Bifunctional protein folD OS=Desulfotalea psychrop... [more]
FOLD_OCHA41.148e-3548.28Bifunctional protein folD OS=Ochrobactrum anthropi... [more]
FOLD_MOOTA1.148e-3548.19Bifunctional protein folD OS=Moorella thermoacetic... [more]
FOLD_FLAPJ1.148e-3551.52Bifunctional protein folD OS=Flavobacterium psychr... [more]
FOLD_DESOH1.148e-3548.02Bifunctional protein folD OS=Desulfococcus oleovor... [more]
FOLD3_SPHWW1.148e-3548.54Bifunctional protein folD 3 OS=Sphingomonas wittic... [more]
FOLD_PARL11.499e-3546.41Bifunctional protein folD OS=Parvibaculum lavament... [more]
FOLD1_ACIAD1.958e-3550.00Bifunctional protein folD 1 OS=Acinetobacter sp. (... [more]
FOLD_RHOCS2.557e-3547.98Bifunctional protein folD OS=Rhodospirillum centen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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