CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RHOBA (Bifunctional protein folD OS=Rhodopirellula baltica GN=folD PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.557e-35
Identity = 83/175 (47.43%), Postives = 117/175 (66.86%), Query Frame = -1
Query:  157 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH---------HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 654
            +N+G L M+GR P F+PCTP G ++LL R+G+E  GK+ VV+GRS+IVG P +++L +          +ATV+I H+ T N  +I  +ADI+IAA G   ++    ++PGAVV+DVG   V          G +L+GDV ++EA  +AS ITPVPGGVGP+T+AMLL NTL +AK
Sbjct:  132 VNVG-LLMQGR-PRFLPCTPHGIVQLLHRTGIETSGKHVVVVGRSDIVGKPMAMMLAQKDSTCGPAVANATVTIAHSRTSNLAEICRQADILIAAVGRPEMITAEMIQPGAVVIDVGINRV----------GDKLVGDVAFDEAEAVASAITPVPGGVGPLTIAMLLHNTLMAAK 294          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RHISN (Bifunctional protein folD OS=Rhizobium sp. (strain NGR234) GN=folD PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.557e-35
Identity = 80/169 (47.34%), Postives = 110/169 (65.09%), Query Frame = -1
Query:  151 LNIGNLAMRGREPLFIPCTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 654
            +N+G L     E  F+PCTP GC+ L+ R  G ++ G +AVV+GRSNIVG P + LL   +ATV+I H+ T N E +  +ADI+IAA G   ++R  W+KPGA V+DVG   +    D       RL+GDV ++ A+  A  +TPVPGGVGPMT+AML++NTL +A  A
Sbjct:  127 INVGKLGTGALETAFVPCTPAGCMILVERIHGKDLSGLSAVVVGRSNIVGKPMANLLLAANATVTIAHSRTANLEVLCRQADILIAAVGRPEMIRSDWIKPGATVIDVGINRIASRDDGG---KTRLVGDVDFDGAVERAGAVTPVPGGVGPMTIAMLMANTLRAACHA 292          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_GEOUR (Bifunctional protein folD OS=Geobacter uraniireducens (strain Rf4) GN=folD PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.340e-35
Identity = 78/166 (46.99%), Postives = 109/166 (65.66%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G L +   +PLF PCTP G + +L  +GVE+ GK  VV+GRSNIVG P + +  + +ATV++ H+ T++       AD+VIAA G   +++G+W+K GAVV+DVG   V            +L+GDV ++ A   AS ITPVPGGVGPMT+ MLL NTL++AKR
Sbjct:  125 NVGRLVIG--KPLFQPCTPYGVMVMLKEAGVELAGKEVVVVGRSNIVGKPVAFMCLQQNATVTLCHSKTRDLAAKVGMADVVIAAVGQPEMIKGAWIKEGAVVIDVGVNRVGEK---------KLVGDVEFDAAAERASAITPVPGGVGPMTITMLLYNTLEAAKR 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_AKKM8 (Bifunctional protein folD OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=folD PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.340e-35
Identity = 80/171 (46.78%), Postives = 112/171 (65.50%), Query Frame = -1
Query:  145 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL--QRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 651
            N+  L +   E  F+PCTP GC+ LL  +G+E  G NAVVIGRS IVG P + LL  ++ +ATV++ H+ TKN  ++   ADI++AA G    V   ++K GAVV+DVG   V+   D S + GYR++GDV Y+E       ITPVPGGVGPMT+AML++NT+ + ++  G
Sbjct:  124 NVAKLVLED-ETGFVPCTPLGCMRLLKAAGIETAGANAVVIGRSMIVGKPMAHLLMSKQANATVTVAHSRTKNLPELCRSADIIVAAIGRPAFVTADFVKDGAVVVDVGINRVE---DASAKRGYRIVGDVAYDEVAPKCRAITPVPGGVGPMTIAMLMANTVKACRQQTG 290          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_SINMW (Bifunctional protein folD 2 OS=Sinorhizobium medicae (strain WSM419) GN=folD2 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.340e-35
Identity = 86/169 (50.89%), Postives = 108/169 (63.91%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLI-RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            N G LA    +P F+PCTP GC+ LL  R G  + G +AVV+G+SNIVG P   LL     TV+I H+ T+N  ++  EADI+I A G   LVRG W+KPGAVV+DVG   V+       E   R++GDV +EEA   A  ITPVPGGVGPMT+A LLSNTL +  R +
Sbjct:  133 NAGRLATG--QPAFVPCTPLGCLLLLKDRLGANLSGLHAVVLGKSNIVGRPMVQLLLAESCTVTIAHSRTRNAPELCREADILIVAVGRPGLVRGDWIKPGAVVIDVGINRVE------AEGKSRIVGDVAFEEAGH-AGAITPVPGGVGPMTIACLLSNTLTAFCRQH 292          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CHRVO (Bifunctional protein folD OS=Chromobacterium violaceum GN=folD PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.362e-35
Identity = 78/164 (47.56%), Postives = 105/164 (64.02%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N+G LA++   PL  PCTP+G + LL   G++  GK AV++G SNIVG P +L +    ATV++ H+ T+N  +  + ADI++   G+ N V+G W+KPGAVV+DVG   +D           +L GDV ++ A   A  ITPVPGGVGPMTVA LL NTLDSA
Sbjct:  127 NVGRLAIK--MPLMRPCTPRGVMTLLEEYGIDPKGKKAVIVGASNIVGRPQALEMLLARATVTVCHSATRNLAEEVAAADILVVGVGIPNFVKGEWVKPGAVVIDVGINRLDTG---------KLCGDVEFDAARERAGFITPVPGGVGPMTVATLLQNTLDSA 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BACA2 (Bifunctional protein folD OS=Bacillus amyloliquefaciens (strain FZB42) GN=folD PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.362e-35
Identity = 77/167 (46.11%), Postives = 107/167 (64.07%), Query Frame = -1
Query:  154 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 654
            LN+G + +   E  F+PCTP G +ELL ++ V++ GK  VV+GRSNIVG P   LL   +ATV+  H+ TKN  + T +ADI++ A G AN ++   +K GA+V+DVG   ++           +L GDV ++EA   AS ITPVPGGVGPMT+ ML  NT+ SA+R
Sbjct:  125 LNVGKMLLG--EDTFLPCTPHGIVELLKKTNVDLSGKEVVVVGRSNIVGKPVGQLLLNENATVTYCHSRTKNMSEHTKKADILVVAVGKANFIKADQIKEGAIVIDVGVNRLESG---------KLCGDVQFDEAKEKASFITPVPGGVGPMTITMLAHNTVKSARR 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_POLSJ (Bifunctional protein folD OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=folD PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.697e-35
Identity = 76/156 (48.72%), Postives = 107/156 (68.59%), Query Frame = -1
Query:  154 EPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 621
            +P F PCTP GC+++L   G ++ GK+AVVIGRSNIVG P +++L + +ATV+I H+ TK+ + +T +AD+++AA G  N++    +KPGAVV+DVG    D           +L GDV +E    +A  ITPVPGGVGPMT+ MLL NTL+SA+R
Sbjct:  134 QPGFWPCTPYGCMKMLESIGYDLRGKHAVVIGRSNIVGKPMAMMLLQKNATVTICHSATKDLKAMTLQADVIVAAVGKRNVLTADMVKPGAVVIDVGMNRNDEG---------KLCGDVDFEGVKEVAGYITPVPGGVGPMTITMLLVNTLESAER 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_EHRCJ (Bifunctional protein folD OS=Ehrlichia canis (strain Jake) GN=folD PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.697e-35
Identity = 78/165 (47.27%), Postives = 107/165 (64.85%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY-RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N+G L    +    IPCTP+GC+ L+      + G +AVVIGRSNIVG P + LL   + TV+ VH+ T+N     S+ADI++AA G+ N V+ SW+KPGA+V+DVG   V+       E G  + +GDV + EA  +AS ITPVPGGVGPMT+A L+ NT+ +A
Sbjct:  127 NVGRLFTGQKRNCLIPCTPRGCLYLIKTVTHNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRNLSDYCSKADILVAAVGIPNFVKSSWIKPGAIVIDVGINSVE-------EDGVKKFVGDVNFAEAKNVASAITPVPGGVGPMTIAFLMVNTVMAA 284          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CYAP7 (Bifunctional protein folD OS=Cyanothece sp. (strain PCC 7424) GN=folD PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.697e-35
Identity = 86/166 (51.81%), Postives = 114/166 (68.67%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G L +RG EP    CTP G + LL    +E+ GK+AVVIGRS +VG P  L+L   +ATV+I H+LT+N  ++T  ADI++AAAG ANL+    +KPGAVV+DVG   ++   D S +   RL+GDV YE    +A  ITPVPGG+GPMTVAMLLSNT+ S ++
Sbjct:  130 NLGRL-VRG-EPGLRSCTPAGVMALLEEYNLEVKGKHAVVIGRSILVGKPMGLMLLEENATVTIAHSLTQNLTELTRSADILVAAAGKANLITPEMVKPGAVVIDVGINRIE---DESGK--ARLVGDVDYEGVAEVAQYITPVPGGIGPMTVAMLLSNTVYSYRQ 288          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_RHOBA2.557e-3547.43Bifunctional protein folD OS=Rhodopirellula baltic... [more]
FOLD_RHISN2.557e-3547.34Bifunctional protein folD OS=Rhizobium sp. (strain... [more]
FOLD_GEOUR3.340e-3546.99Bifunctional protein folD OS=Geobacter uraniireduc... [more]
FOLD_AKKM83.340e-3546.78Bifunctional protein folD OS=Akkermansia muciniphi... [more]
FOLD2_SINMW3.340e-3550.89Bifunctional protein folD 2 OS=Sinorhizobium medic... [more]
FOLD_CHRVO4.362e-3547.56Bifunctional protein folD OS=Chromobacterium viola... [more]
FOLD_BACA24.362e-3546.11Bifunctional protein folD OS=Bacillus amyloliquefa... [more]
FOLD_POLSJ5.697e-3548.72Bifunctional protein folD OS=Polaromonas sp. (stra... [more]
FOLD_EHRCJ5.697e-3547.27Bifunctional protein folD OS=Ehrlichia canis (stra... [more]
FOLD_CYAP75.697e-3551.81Bifunctional protein folD OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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