CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CAUSK (Bifunctional protein folD OS=Caulobacter sp. (strain K31) GN=folD PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.697e-35
Identity = 84/172 (48.84%), Postives = 110/172 (63.95%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDP--SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N G LA     P    CTP GC+ LL     ++ GK AVVIGRSN++G P + LL     TV+I H+ +++   I  EADI++AA G A +VRG W+KPGA V+DVG      S DP  +     RL+GDV ++EA  +A  ITPVPGGVGPMT+AMLL+NT+ +AKR  G
Sbjct:  127 VNAGRLA--SGLPALTSCTPAGCMVLLRDVVGDLTGKRAVVIGRSNLMGKPMAQLLLAADCTVTIAHSRSRDLPAICREADILVAAVGRAEMVRGDWIKPGATVIDVGISRFP-SRDPVAAAAGKTRLVGDVAFDEAKEVAGAITPVPGGVGPMTIAMLLANTVSAAKRLNG 295          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_AZOSE (Bifunctional protein folD OS=Azoarcus sp. (strain EbN1) GN=folD PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.697e-35
Identity = 81/166 (48.80%), Postives = 111/166 (66.87%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G L+ +G+E  F+PCTP G +++L   GV + G  AVVIGRSNIVG P ++LL    ATV++ H+ T++    T  ADI++AA G    V G  +KPGAVV+DVG   +    D       +L GDV +E A  +AS+ITPVPGGVGPMT+ MLL+NT++SA+R
Sbjct:  126 NVGRLS-QGQEA-FLPCTPHGVMKMLEAGGVPVQGAEAVVIGRSNIVGKPMAMLLTNAGATVTVTHSKTRDLAFHTRRADILVAAIGKPRFVTGDMIKPGAVVIDVGINRLTEGPDAG-----KLCGDVDFESAKEVASLITPVPGGVGPMTITMLLANTVESAER 284          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_NITHX (Bifunctional protein folD OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=folD PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.440e-35
Identity = 81/164 (49.39%), Postives = 105/164 (64.02%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N G LA  G  P   PCTP GCI L       + G +A+VIGRSN+VG P   LL   +ATV+I H+ ++N  ++   AD+V AA G A +VRG WLKPGA V+DVG     ++  P+ +   RL+GDV ++EAM +A  +TPVPGGVG MTVA LL NTL +A
Sbjct:  127 NAGRLA--GGLPALSPCTPLGCIILTKSVHSSLEGMDAIVIGRSNLVGRPLVQLLLNENATVTIAHSRSRNLPELCRRADLVYAAVGKAEMVRGDWLKPGATVIDVG-----ITRRPAADGKTRLIGDVAFDEAMEVAGAVTPVPGGVGQMTVACLLVNTLRAA 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD1_THICR (Bifunctional protein folD 1 OS=Thiomicrospira crunogena (strain XCL-2) GN=folD1 PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.440e-35
Identity = 80/164 (48.78%), Postives = 107/164 (65.24%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N+G LA R   P   PCTP G + +L ++G+ + G NAVV+G SNIVG+P +L L    ATV++ H+ TK+  Q  +EAD+V+   G+ N+V+G W+K GA+V+DVG   +D   D S      L GDV Y+ A   AS ITPVPGGVGPMT+A LL NTL +A
Sbjct:  127 NMGRLATR--LPELAPCTPHGVMTMLAKTGIPLRGLNAVVVGASNIVGVPMALELLNERATVTVCHSATKDLPQKVAEADLVVVGVGIPNMVKGDWIKDGAIVIDVGINRLD---DGS------LCGDVEYDVAKEKASWITPVPGGVGPMTIATLLQNTLQAA 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_GLUOX (Bifunctional protein folD OS=Gluconobacter oxydans GN=folD PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35
Identity = 74/151 (49.01%), Postives = 102/151 (67.55%), Query Frame = -1
Query:  157 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 609
            +PCTP GC+ LL     ++ G +AVVIG SN+VG P + LL + + TV++ H  T+N +++  EADI++ A G + LVRG W+KPGA V+DVG   V     P+     RL+GDV ++EA  +A  ITPVPGGVGPMT+A LL NTL +A+
Sbjct:  149 VPCTPLGCLMLLQSVHKDMTGMHAVVIGASNLVGKPMAQLLLKENCTVTVAHIHTRNTKELAREADILVVATGKSELVRGDWIKPGATVIDVGITRV-----PAENGKTRLVGDVAFDEAFPIAGHITPVPGGVGPMTIACLLHNTLQAAR 294          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_GLUDA (Bifunctional protein folD OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=folD PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35
Identity = 79/172 (45.93%), Postives = 111/172 (64.53%), Query Frame = -1
Query:  139 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 654
            +N G LA+   +P  +PCTP GC+ LL     ++ G +AV+IG SN+VG P + LL     TV++ H  T++P  +  + DI++ A G   LVRG W+KPGA V+DVG   + +   PS +   RL+GDV ++EA+  A  ITPVPGGVGPMT+A LL+NTL +A+R  G T
Sbjct:  144 VNAGRLALG--QPGIVPCTPLGCLMLLKSELGDLRGLHAVIIGASNLVGRPMARLLLAEGCTVTVGHIDTRDPAALARQGDILVVATGCHGLVRGDWIKPGAAVIDVGITRISL---PSGK--TRLVGDVAFDEAVTRAGCITPVPGGVGPMTIACLLNNTLAAARRIVGAT 308          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_DEHSC (Bifunctional protein folD OS=Dehalococcoides sp. (strain CBDB1) GN=folD PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35
Identity = 83/175 (47.43%), Postives = 117/175 (66.86%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQR---HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLM-GDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G + +   EP F+PCTP G  ELLIRSG++I G + V++GRSN+VG P  ++LLQ+    +ATV+I H+ TKN  +IT +ADI++AA G    +    ++ GAVV+DVGT  +  + +     G R++ GDV +EE    A  ITPVP GVGPMT+ ML+ NTL +AKRA G
Sbjct:  126 VNVGRMCLG--EPCFLPCTPHGVQELLIRSGIKIEGTHVVIVGRSNLVGKPLANILLQKAPGANATVTICHSGTKNLPEITRQADILVAAMGKPKFITADMVREGAVVIDVGTTCIGYTPE-----GKRILSGDVDFEEVKEKAFAITPVPKGVGPMTIIMLMLNTLTAAKRAVG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_GEOSL (Bifunctional protein folD 2 OS=Geobacter sulfurreducens GN=folD2 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.717e-35
Identity = 79/167 (47.31%), Postives = 107/167 (64.07%), Query Frame = -1
Query:  151 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 651
            N+G L     +P F PCTP G + +L  +GV++ GK  VV+GRSNIVG P +L+  + +ATV+I H+ T++       AD+VIAA GV  +++G W+K GAVV+DVG   V            +L+GDV +  A   AS ITPVPGGVGPMT+ MLL NTL++AK A
Sbjct:  125 NVGRLVTG--KPTFQPCTPYGVMVMLQEAGVDLAGKEVVVVGRSNIVGKPVALMCLQRNATVTICHSKTRDLPGRVRAADVVIAAVGVPEMIKGDWIKEGAVVIDVGVNRVGEK---------KLVGDVEFAAAAERASAITPVPGGVGPMTITMLLHNTLEAAKMA 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_STAES (Bifunctional protein folD OS=Staphylococcus epidermidis (strain ATCC 12228) GN=folD PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34
Identity = 79/172 (45.93%), Postives = 110/172 (63.95%), Query Frame = -1
Query:  139 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 654
            +NIG L +   E  F+PCTP G +E+L  + + + GKNAVVIGRS+IVG P S LL + +ATV+I+H+ TKN      +AD++++A G   LV    +K GAV++DVG  P         +   +L GDV Y+E   +AS ITPVPGGVGP+T+ M+L+NTL + K   G T
Sbjct:  125 INIGKLYID--EQTFVPCTPLGIMEILKHADINLEGKNAVVIGRSHIVGQPVSKLLLQANATVTILHSRTKNMNAHLKQADVIVSAVGQPGLVTKENVKKGAVIIDVGNTP---------DENGKLKGDVAYDEVKEIASAITPVPGGVGPLTITMVLNNTLLAEKLRRGLT 285          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_SORC5 (Bifunctional protein folD OS=Sorangium cellulosum (strain So ce56) GN=folD PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34
Identity = 79/166 (47.59%), Postives = 105/166 (63.25%), Query Frame = -1
Query:  157 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 654
            +N G LAM GR     PCTP GC+ LL  +GVE+ G  AVV+GRSN+VG P + LL   HATV+I H  T++ + +  EAD+++ AAG A L+ G W+K GA V+DVG    D           +L+GDV ++     A+ ITPVPGGVGPMT+A LL  TL +A+
Sbjct:  126 VNAGLLAM-GRPGGIAPCTPVGCMRLLAEAGVELAGARAVVVGRSNLVGRPMAQLLLARHATVAIAHTRTRDLKALCREADVLVVAAGKAKLIGGDWIKEGATVIDVGMNRDDAG---------KLVGDVDFDAVRERAAWITPVPGGVGPMTIASLLETTLRAAE 281          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_CAUSK5.697e-3548.84Bifunctional protein folD OS=Caulobacter sp. (stra... [more]
FOLD_AZOSE5.697e-3548.80Bifunctional protein folD OS=Azoarcus sp. (strain ... [more]
FOLD_NITHX7.440e-3549.39Bifunctional protein folD OS=Nitrobacter hamburgen... [more]
FOLD1_THICR7.440e-3548.78Bifunctional protein folD 1 OS=Thiomicrospira crun... [more]
FOLD_GLUOX9.717e-3549.01Bifunctional protein folD OS=Gluconobacter oxydans... [more]
FOLD_GLUDA9.717e-3545.93Bifunctional protein folD OS=Gluconacetobacter dia... [more]
FOLD_DEHSC9.717e-3547.43Bifunctional protein folD OS=Dehalococcoides sp. (... [more]
FOLD2_GEOSL9.717e-3547.31Bifunctional protein folD 2 OS=Geobacter sulfurred... [more]
FOLD_STAES1.269e-3445.93Bifunctional protein folD OS=Staphylococcus epider... [more]
FOLD_SORC51.269e-3447.59Bifunctional protein folD OS=Sorangium cellulosum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
back to top