CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RHIL3 (Bifunctional protein folD OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=folD PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34
Identity = 81/173 (46.82%), Postives = 111/173 (64.16%), Query Frame = -1
Query:  139 LNIGNLAMRGREPLFIPCTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 654
            +N G LA    +   + CTP G +  + R+ G ++ G NAVVIGRSN+ G P + LL   +ATV+I H+ TKN  ++   ADI++AA G   +VR  W+KPGA V+DVG     V+   + E   RL+GDV +EE   +AS ITPVPGGVGPMT+AML++NT+ +A R  G T
Sbjct:  125 VNAGKLATGDLKTGLVSCTPAGAMVFVRRTHGEDLSGLNAVVIGRSNLFGKPMAQLLLNANATVTIAHSRTKNLAEVCRNADILVAAVGRPEMVRADWVKPGATVIDVGI--NRVAAPETGEGKTRLVGDVAFEEVSAVASTITPVPGGVGPMTIAMLMANTVIAAHRTAGQT 295          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_HAHCH (Bifunctional protein folD OS=Hahella chejuensis (strain KCTC 2396) GN=folD PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34
Identity = 82/168 (48.81%), Postives = 104/168 (61.90%), Query Frame = -1
Query:  148 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 651
            N+G LA R   P+  PCTPKG + LL R+GVE+ GK+A+V+G SNIVG P  L L     TV+I H  T N     S+ADIV+ A G   +V+G W+KPGA+V+DVG    D            L+GD+ + EA   AS ITPVPGGVGPMTVA L+ NTL +A   +
Sbjct:  136 NLGRLAQR--MPVLRPCTPKGIMTLLARTGVELRGKDALVVGASNIVGRPMGLELLLAGCTVTITHRFTVNLPAKVSQADIVVVAVGRPGIVKGEWIKPGAIVIDVGINRRDDGA---------LVGDIEFNEAAERASWITPVPGGVGPMTVATLMENTLYAANHLH 292          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_DEHSB (Bifunctional protein folD OS=Dehalococcoides sp. (strain BAV1) GN=folD PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34
Identity = 83/175 (47.43%), Postives = 117/175 (66.86%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQR---HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLM-GDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N+G + +   EP F+PCTP G  ELLIRSG++I G + V++GRSN+VG P  ++LLQ+    +ATV+I H+ TKN  +IT +ADI++AA G    +    ++ GAVV+DVGT  +  + +     G R++ GDV +EE    A  ITPVP GVGPMT+ ML+ NTL +AKRA G
Sbjct:  126 VNVGRMCLG--EPCFLPCTPHGVQELLIRSGIKIEGTHVVIVGRSNLVGKPLANILLQKAPGANATVTICHSGTKNLPEITRQADILVAAMGKPKFITSDMVREGAVVIDVGTTCIGYTPE-----GKRILSGDVDFEEVKEKAFAITPVPKGVGPMTIIMLMLNTLTAAKRAAG 293          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD2_PSE14 (Bifunctional protein folD 2 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=folD2 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34
Identity = 77/166 (46.39%), Postives = 114/166 (68.67%), Query Frame = -1
Query:  154 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 651
            N+G L+ +GR  L  PCTP GC+ LL  +  ++ GK+AVVIGRSNIVG P + LL + H +V++VH+ + + + +   ADIV+AA G   ++  SWLKPGAVV+DVG   ++       +   RL+GD+ ++ A+ +AS ITPVPGGVGPMT+A L+ NT+ +A++
Sbjct:  126 NVGGLS-QGRSVL-TPCTPSGCMHLLEETCGDLSGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCQLADIVVAAVGRPRMIDASWLKPGAVVIDVGINRIE------DQGRSRLVGDIDFDNALSVASAITPVPGGVGPMTIAFLMKNTVTAARQ 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_STAEQ (Bifunctional protein folD OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=folD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 79/172 (45.93%), Postives = 110/172 (63.95%), Query Frame = -1
Query:  139 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 654
            +NIG L +   E  F+PCTP G +E+L  + + + GKNAVVIGRS+IVG P S LL + +ATV+I+H+ TKN      +AD++++A G   LV    +K GAV++DVG  P         +   +L GDV Y+E   +AS ITPVPGGVGP+T+ M+L+NTL + K   G T
Sbjct:  125 INIGKLYID--EQTFVPCTPLGIMEILKHADINLEGKNAVVIGRSHIVGQPVSKLLLQANATVTILHSRTKNMNAHLKQADVIVSAVGQPGLVTKENVKKGAVIIDVGNTP---------DENGKLKGDVAYDEIKEIASAITPVPGGVGPLTITMVLNNTLLAEKLRRGLT 285          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_NITWN (Bifunctional protein folD OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=folD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 82/164 (50.00%), Postives = 104/164 (63.41%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N G LA  G      PCTP GCI L       + G +A+VIGRSN+VG P   LL   +ATV+I H+ ++N  ++   AD+V AA G A +VRG WLKPGA V+DVG   V     P+ E   RL+GDV ++EAM++A  +TPVPGGVG MTVA LL NTL +A
Sbjct:  127 NAGRLA--GGLSALSPCTPLGCIILTKSVHASLEGLDAIVIGRSNLVGRPLVQLLLNENATVTIAHSRSRNLPELCRRADLVYAAVGRAEMVRGDWLKPGATVIDVGITRV-----PAAEGKTRLIGDVAFDEAMQVAGAVTPVPGGVGQMTVACLLVNTLRAA 283          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_EHRCR (Bifunctional protein folD OS=Ehrlichia chaffeensis (strain Arkansas) GN=folD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 75/165 (45.45%), Postives = 108/165 (65.45%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY-RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N+G L    ++   IPCTP+GC+ L+      + G +AVVIGRSNIVG P + LL   + TV+ VH+ T+N     S+AD+++AA G+ + V+ SW+KPGA+V+DVG   ++       E G  + +GDV + EA  +AS ITPVPGGVGPMT+A L+ NT+ +A
Sbjct:  127 NVGRLFTGQKKDCLIPCTPRGCLYLIKTVTRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRNLPDYCSKADVLVAAVGIPHFVKSSWIKPGAIVIDVGINAIE-------EGGVKKFVGDVDFSEARNIASAITPVPGGVGPMTIAFLMVNTVIAA 284          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_RHILT (Bifunctional protein folD OS=Rhizobium leguminosarum bv. trifolii GN=folD PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.165e-34
Identity = 81/173 (46.82%), Postives = 110/173 (63.58%), Query Frame = -1
Query:  139 LNIGNLAMRGREPLFIPCTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 654
            +N G LA    +   + CTP G +  + R+ G ++ G NAVVIGRSN+ G P + LL   +ATV+I H+ TKN  ++   ADI++AA G   +VR  W+KPGA V+DVG     V+     E   RL+GDV +EE   +AS ITPVPGGVGPMT+AML++NT+ +A R  G T
Sbjct:  125 VNAGKLATGDLKTGLVSCTPAGAMVFVRRTHGEDLSGLNAVVIGRSNLFGKPMAQLLLNANATVTIAHSRTKNLAEVCRNADILVAAVGRPEMVRADWVKPGATVIDVGI--NRVAAPERGEGKTRLVGDVAFEEVSAVASTITPVPGGVGPMTIAMLMANTVIAAHRTAGQT 295          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_ERYLH (Bifunctional protein folD OS=Erythrobacter litoralis (strain HTCC2594) GN=folD PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.165e-34
Identity = 84/170 (49.41%), Postives = 111/170 (65.29%), Query Frame = -1
Query:  145 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 654
            +N G L++  R   F+PCTP GC+ LL     ++ G  AVVIGRSNIVG P + LL   +ATV+I H+ T+N  ++   ADIV+AA G A +V+  WLK GA V+DVG     +  +P  E G RL+GDV +  A  +A+ ITPVPGGVGPMT+A+LL NTL +A R  G
Sbjct:  126 INAGRLSVGQRG--FVPCTPLGCMMLLADRLGDLSGLEAVVIGRSNIVGKPMAQLLLDANATVTIAHSRTRNLPEVVKRADIVVAAVGRAEMVKPEWLKDGATVIDVGI--NRLPPEPGKERG-RLVGDVDFGRASEVAAAITPVPGGVGPMTIAVLLRNTLVAAHRNEG 290          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_CAUCR (Bifunctional protein folD OS=Caulobacter crescentus GN=folD PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.165e-34
Identity = 81/171 (47.37%), Postives = 109/171 (63.74%), Query Frame = -1
Query:  145 NIGNLAMRGREPLFIPCTPKGCIELLIRSGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG-YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 651
            N G LA     P   PCTP GC+ +LIR  + ++ GK AVVIGRSN++G P + +L     TV+I H+ +++   I  +ADIV+AA G A +V+  W+KPGAVV+DVG          +   G  RL+GDV ++E   +A  ITPVPGGVGPMT+A LL+NTL +AKR  G
Sbjct:  128 NAGRLA--SGLPALAPCTPTGCM-MLIRDAIGDLKGKTAVVIGRSNLMGKPMAQMLLAADCTVTIAHSRSQDLPSIVRQADIVVAAVGRAEMVKADWVKPGAVVIDVGITRFPARDPEAAAAGKTRLVGDVAFDEVREVAGAITPVPGGVGPMTIACLLANTLTAAKRLSG 295          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_RHIL31.269e-3446.82Bifunctional protein folD OS=Rhizobium leguminosar... [more]
FOLD_HAHCH1.269e-3448.81Bifunctional protein folD OS=Hahella chejuensis (s... [more]
FOLD_DEHSB1.269e-3447.43Bifunctional protein folD OS=Dehalococcoides sp. (... [more]
FOLD2_PSE141.269e-3446.39Bifunctional protein folD 2 OS=Pseudomonas syringa... [more]
FOLD_STAEQ1.658e-3445.93Bifunctional protein folD OS=Staphylococcus epider... [more]
FOLD_NITWN1.658e-3450.00Bifunctional protein folD OS=Nitrobacter winograds... [more]
FOLD_EHRCR1.658e-3445.45Bifunctional protein folD OS=Ehrlichia chaffeensis... [more]
FOLD_RHILT2.165e-3446.82Bifunctional protein folD OS=Rhizobium leguminosar... [more]
FOLD_ERYLH2.165e-3449.41Bifunctional protein folD OS=Erythrobacter litoral... [more]
FOLD_CAUCR2.165e-3447.37Bifunctional protein folD OS=Caulobacter crescentu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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