CN188899

Overview
NameCN188899
Unique NameCN188899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length304
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5773 contig Csv1_Contig5773:964..1267. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.250e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.250e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.250e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.250e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.250e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.250e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.250e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.250e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.250e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.250e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of CN188899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBIQ_MAIZE2.250e-15100.00Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO2.250e-15100.00Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]
UBIQ_LUPAL2.250e-15100.00Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS2.250e-15100.00Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU2.250e-15100.00Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN2.250e-15100.00Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_EUPEU2.250e-15100.00Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_DESAN2.250e-15100.00Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA2.250e-15100.00Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_CHLRE2.250e-15100.00Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188899 ID=CN188899; Name=CN188899; organism=Citrus sinensis; type=EST; length=304bp
TTTTTTTAAAACTAGTGCTTATATTATTATTACCAATAGAAAGAGGAAAT
TACGCCCAAGCGGCTGGCCATTACACAATTGTAATTACAAAATAATTAAA
GCAAAGCGCCCAATCCAACCTAATTAATTATTATTAGCGCCATCCAATCA
AACGCGGACACATCCACATTTATTTTTTTAGAAGTCACCACCACGGAGAC
GGAGGACAAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGA
GTCCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTC
CGGA
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