CN188899

Overview
NameCN188899
Unique NameCN188899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length304
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5773 contig Csv1_Contig5773:964..1267. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of CN188899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBIQ_STRPU5.013e-1597.44Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_SPOFR5.013e-1597.44Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_SCHPO5.013e-1597.44Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_RAT5.013e-1597.44Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]
UBIQ_RABIT5.013e-1597.44Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]
UBIQ_PONPY5.013e-1597.44Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY5.013e-1597.44Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG5.013e-1597.44Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PHYIN5.013e-1597.44Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_PANTR5.013e-1597.44Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188899 ID=CN188899; Name=CN188899; organism=Citrus sinensis; type=EST; length=304bp
TTTTTTTAAAACTAGTGCTTATATTATTATTACCAATAGAAAGAGGAAAT
TACGCCCAAGCGGCTGGCCATTACACAATTGTAATTACAAAATAATTAAA
GCAAAGCGCCCAATCCAACCTAATTAATTATTATTAGCGCCATCCAATCA
AACGCGGACACATCCACATTTATTTTTTTAGAAGTCACCACCACGGAGAC
GGAGGACAAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGA
GTCCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTC
CGGA
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