CN188899

Overview
NameCN188899
Unique NameCN188899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length304
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5773 contig Csv1_Contig5773:964..1267. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.013e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.547e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188899 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.551e-15
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = -2 
Query:  187 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 303
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76
The following BLAST results are available for this feature:
BLAST of CN188899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBIQ_CERCA5.013e-1597.44Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO5.013e-1597.44Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA5.013e-1597.44Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CANAL5.013e-1597.44Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBIQ_CAMDR5.013e-1597.44Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_CAEEL5.013e-1597.44Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_BOVIN5.013e-1597.44Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_AGLNE5.013e-1597.44Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_TRYBB6.547e-1597.44Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_SHEEP8.551e-1594.87Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188899 ID=CN188899; Name=CN188899; organism=Citrus sinensis; type=EST; length=304bp
TTTTTTTAAAACTAGTGCTTATATTATTATTACCAATAGAAAGAGGAAAT
TACGCCCAAGCGGCTGGCCATTACACAATTGTAATTACAAAATAATTAAA
GCAAAGCGCCCAATCCAACCTAATTAATTATTATTAGCGCCATCCAATCA
AACGCGGACACATCCACATTTATTTTTTTAGAAGTCACCACCACGGAGAC
GGAGGACAAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGA
GTCCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTC
CGGA
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