CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROM5 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.753e-45
Identity = 86/142 (60.56%), Postives = 111/142 (78.17%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            ADL G +DL+E I  G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT++I  AI+EFK GK+E+RADK GIVH+ FGKA F+E+ L  N     +SI+ NKP GAKG YWK+ Y+ S+MGPS++++I  + DY+
Sbjct:   91 ADLFGEEDLVESINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTSDIASAIKEFKAGKLEFRADKAGIVHVRFGKASFTENALFENLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQVDINALQDYQ 232          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROM2 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.753e-45
Identity = 87/142 (61.27%), Postives = 110/142 (77.46%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            ADL G +DL+E I  G MEFD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT +I  AI+EFK GK+E+RADK GIVH+ FGKA F+++ L  N     +SI+ NKP GAKG YWKS Y+ S+MGPS++++I  + DY+
Sbjct:   91 ADLFGEEDLVESINKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIGNAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFENLKTLQESIDKNKPSGAKGKYWKSFYVTSTMGPSVQVDINAVQDYQ 232          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROM0 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.696e-45
Identity = 86/142 (60.56%), Postives = 110/142 (77.46%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            ADL G +DL+E I  G MEFD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT +I  AI+EFK GK+E+RADK GIVH+ FGKA F+++ L  N     +SI+ NKP GAKG YWK+ Y+ S+MGPS++++I  + DY+
Sbjct:   91 ADLFGEEDLVESINKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFDNLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQVDINAVQDYQ 232          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNPW (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH7803) GN=rplA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.133e-45
Identity = 86/140 (61.43%), Postives = 109/140 (77.86%), Query Frame = -1
Query:  346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            A+L G +DL+E I  G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVTT++  AI EFK GK+E+RAD+TGIVH+ FGKA FSE +LL N     ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++I  + D
Sbjct:   91 AELAGDEDLVETISKGEMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAINEFKAGKLEFRADRTGIVHVRFGKASFSEGNLLDNLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDIAALQD 230          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CYAP7 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 7424) GN=rplA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.133e-45
Identity = 80/143 (55.94%), Postives = 116/143 (81.12%), Query Frame = -1
Query:  337 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 765
            AD+VG ++LI++I+ G M+F+ LIA+PDMM KVA LG++LGPRGLMP+PK GTVTT++  AI+EFK GK E+RAD+TGIVH+ FGKA F+ +DLL+N  A  ++I+ N+P GAKG YW++ ++ +SMGPSI++++  + D K+
Sbjct:   93 ADIVGSEELIDEIQNGMMDFEVLIATPDMMPKVAKLGRLLGPRGLMPSPKGGTVTTDLAAAIQEFKAGKQEFRADRTGIVHVMFGKASFTAEDLLVNLKALQETIDRNRPSGAKGRYWRTVFVSASMGPSIQVDVNSLRDLKV 235          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ACAM1 (50S ribosomal protein L1 OS=Acaryochloris marina (strain MBIC 11017) GN=rplA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.133e-45
Identity = 86/143 (60.14%), Postives = 113/143 (79.02%), Query Frame = -1
Query:  337 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 765
            AD+VG ++LI +I+ G M+FD LIA+PDMM +VA +G+ILGPRGLMP+PKAGTVT ++PQAIEEFK GK+E+RAD+TGIVH+ FGKA FS  DLL N  A   +I+ N+P GAKG YW+S Y+ ++MGPSI ++I  + D  L
Sbjct:   92 ADVVGSEELITEIQQGRMDFDLLIATPDMMPQVAKVGRILGPRGLMPSPKAGTVTFDLPQAIEEFKAGKLEFRADRTGIVHVMFGKAKFSAQDLLENLKALQDTIDRNRPSGAKGRYWRSLYVSATMGPSIEVDISSLRDLNL 234          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROMP (50S ribosomal protein L1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.010e-45
Identity = 86/142 (60.56%), Postives = 110/142 (77.46%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            ADL G +DL+E I  G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT +I  AI+EFK GK+E+RADK GIVH+ FGKA F+E+ L  N     +SI+ NKP GAKG YW+S Y+ S+MGPS++++I  + DY+
Sbjct:   91 ADLFGEEDLVESINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTGDIASAIKEFKAGKLEFRADKAGIVHVRFGKASFTENALFENLKTLQESIDKNKPSGAKGKYWRSFYLTSTMGPSVQVDINALQDYQ 232          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RK1_GRATL (50S ribosomal protein L1, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl1 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.010e-45
Identity = 83/136 (61.03%), Postives = 114/136 (83.82%), Query Frame = -1
Query:  358 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 765
            AD+VGG+DLI++IK G ++FDKLIA+PDMM+ +A LGKILGP+GLMP+PKAGTVT N+   I+EFK GK+EY+ D++GI+HIPFGK +F+ +DL IN +   +SI+ N+P+G+KG YWKS +I S+MGPSI L+I+
Sbjct:   92 ADIVGGEDLIDEIKKGRLDFDKLIATPDMMMSIAKLGKILGPKGLMPSPKAGTVTHNLITTIKEFKAGKLEYKIDRSGILHIPFGKLNFNVEDLHINLITLQESIDRNRPQGSKGKYWKSVHINSTMGPSIPLDIQ 227          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROM9 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.046e-44
Identity = 85/142 (59.86%), Postives = 110/142 (77.46%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            ADL G +DL+E I  G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT +I  AI+EFK GK+E+RADK GIVH+ FGKA F+++ L  N     +SI+ NKP G+KG YWKS Y+ S+MGPS++++I  + DY+
Sbjct:   91 ADLFGEEDLVESINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFDNLKTLQESIDKNKPSGSKGKYWKSFYVTSTMGPSVQVDISAVQDYQ 232          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROMM (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.366e-44
Identity = 86/140 (61.43%), Postives = 108/140 (77.14%), Query Frame = -1
Query:  346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            A+L G DDL+E I  G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVTT++  AI+EFK GK+E+RAD+ GIVH+ FGKA FS D LL N     ++I+ NKP GAKG YWKS YI S+MGPS+ +++  + D
Sbjct:   91 AELAGDDDLVESIGKGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKEFKAGKLEFRADRAGIVHVRFGKASFSADALLENLKTLQETIDRNKPSGAKGRYWKSLYITSTMGPSVEVDVTALQD 230          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_PROM52.753e-4560.5650S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM22.753e-4561.2750S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM04.696e-4560.5650S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_SYNPW6.133e-4561.4350S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_CYAP76.133e-4555.9450S ribosomal protein L1 OS=Cyanothece sp. (strain... [more]
RL1_ACAM16.133e-4560.1450S ribosomal protein L1 OS=Acaryochloris marina (... [more]
RL1_PROMP8.010e-4560.5650S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RK1_GRATL8.010e-4561.0350S ribosomal protein L1, chloroplastic OS=Gracila... [more]
RL1_PROM91.046e-4459.8650S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROMM1.366e-4461.4350S ribosomal protein L1 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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