CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HELAH (50S ribosomal protein L1 OS=Helicobacter acinonychis (strain Sheeba) GN=rplA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.373e-35
Identity = 70/142 (49.30%), Postives = 98/142 (69.01%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            AD+VGGDDL E+IK G ++FD +IA+PDMM  V  +G+ILGP+GLMPNPK GTVT +I +A+   K G+V ++ DK G +H P GK  F E+ +  N L  VK+I   KP  AKG Y ++A +  +M PS+ L+ +E++D K
Sbjct:   93 ADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFKVDKKGNIHAPIGKVSFPEEKIKENMLELVKTINRLKPNSAKGKYIRNAALSLTMSPSVSLDAQELMDIK 234          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESAD (50S ribosomal protein L1 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.373e-35
Identity = 63/134 (47.01%), Postives = 95/134 (70.90%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VGGDDL+ ++K G+++FDK IA+PDMM KV  +G++LGPRGLMPN K GTVT ++  A++E K G+VE++ DK G++H P GK  F  + LL N  + ++++   KP  AKG Y K+  + ++MGP  +++
Sbjct:   91 ADFVGGDDLVAKVKDGWLDFDKAIATPDMMAKVGQIGRVLGPRGLMPNAKTGTVTFDVASAVKEVKAGRVEFKVDKAGVLHAPIGKVSFGAEKLLENLKSLLETVNKLKPSSAKGTYMKAVAVATTMGPGFKID 224          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DEIRA (50S ribosomal protein L1 OS=Deinococcus radiodurans GN=rplA PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.373e-35
Identity = 68/134 (50.75%), Postives = 98/134 (73.13%), Query Frame = -1
Query:  367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765
            AD+VG D+LIE+I GGFM+FD ++A+PDMM ++   L ++LGPRGL+PNPK+GTV  ++   +   K G++E+R DKTG+VH P GKA F   +L  N+ A + ++E  KP  AKGV+ +SAY+ ++MGPSI L
Sbjct:   92 ADVVGSDELIERIAGGFMDFDAVVATPDMMAQIGQKLARLLGPRGLLPNPKSGTVGADVAGMVRGLKAGRIEFRNDKTGVVHAPIGKASFESGNLSANYQALISALEGAKPGTAKGVFLRSAYLTTTMGPSIPL 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNAS (50S ribosomal protein L1 OS=Syntrophus aciditrophicus (strain SB) GN=rplA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.406e-35
Identity = 71/134 (52.99%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD  G D+ IE+IK G++EFD++IA+PDMM  V  LGKILGPRGLMPNPK GTVT ++  A++E K GKVE+R +K GIVH P GK  F  D L+ N  A ++ I   KP  +KG Y K   + S+MGP +R++
Sbjct:   92 ADYAGSDEFIEKIKSGWLEFDRVIATPDMMGNVGKLGKILGPRGLMPNPKVGTVTFDVATAVKEVKAGKVEFRVEKAGIVHSPVGKVSFGPDRLMENIQALIEMIIKLKPATSKGTYIKGIALSSTMGPGVRVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GEOSL (50S ribosomal protein L1 OS=Geobacter sulfurreducens GN=rplA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.406e-35
Identity = 72/138 (52.17%), Postives = 95/138 (68.84%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG +DL+ +I+ G+ EFD  IA+PDMM  V  +GK+LGPRGLMPNPK GTVT ++ +A++E K GKVE+R +K GIVH P GK  F  D L  N LA V+++   KP  AKG Y K   I S+MGP + L+I ++
Sbjct:   92 ADYVGAEDLVTKIQEGWFEFDTAIATPDMMGVVGKIGKLLGPRGLMPNPKVGTVTFDVGRAVKESKAGKVEFRVEKAGIVHAPVGKVSFDADKLKENLLALVEALLKAKPSAAKGTYVKKISISSTMGPGLNLDISDV 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SELRU (50S ribosomal protein L1 OS=Selenomonas ruminantium GN=rplA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.754e-35
Identity = 68/135 (50.37%), Postives = 94/135 (69.63%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            AD VG D+++++I+GG+++FD  +A+PDMM  V  LGK+LGPRGLMPNPK GTVT ++ +A+ E K GKVEYR DK G VH P GKA F  + L  NF A + ++   KP  AKG Y +S  + ++MGP I + +
Sbjct:   92 ADFVGSDEIVQKIQGGWLDFDVAVATPDMMGTVGRLGKVLGPRGLMPNPKLGTVTMDLTKAVSEIKAGKVEYRTDKAGNVHCPIGKASFDAEKLQQNFQALIDTLNRVKPAAAKGQYMRSITVSATMGPGIPVQL 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESPS (50S ribosomal protein L1 OS=Desulfotalea psychrophila GN=rplA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.754e-35
Identity = 68/134 (50.75%), Postives = 95/134 (70.90%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VGGDDL+E+I+GG++EFDK +A+PDMM  V  +G++LGPR LMPN K GTVT ++ + IEE K GKV+++ +K GI+H   GK  F  + L  N LA ++ I   KP  +KGVY KS  I S+MGP ++++
Sbjct:   92 ADFVGGDDLVEKIQGGWLEFDKTVATPDMMGTVGKIGRVLGPRNLMPNAKLGTVTFDVAKVIEEIKSGKVDFKVEKAGILHAGIGKISFGNEKLTANALAFIEKIIQLKPSSSKGVYLKSVTISSTMGPGVKVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ACICJ (50S ribosomal protein L1 OS=Acidiphilium cryptum (strain JF-5) GN=rplA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.754e-35
Identity = 71/138 (51.45%), Postives = 96/138 (69.57%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD+VG +DL E ++ G +EFD+ IA+PDMM  V  LGKILGPRGLMPNPK GTVT ++  AI   K G+VE+RA+K GI+H   GKA F  + L+ N  A V +I+  KP GAKG Y + A + S+MGP +R+++  +
Sbjct:   91 ADVVGAEDLAELVQNGTIEFDRCIATPDMMALVGRLGKILGPRGLMPNPKLGTVTMDVKGAITAAKSGQVEFRAEKAGIIHAGIGKASFEAEKLIENAKALVDAIQKAKPTGAKGTYLQKAALSSTMGPGVRVDVSSL 228          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYMTH (50S ribosomal protein L1 OS=Symbiobacterium thermophilum GN=rplA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.515e-35
Identity = 72/134 (53.73%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG +DL+ +I+ G+++FD  +A+PDMM  V  LG+ILGPRGLMPNPK GTVT ++  AI+E K GKVEYR DK GIV  P GKA F  + L  NF A  +++   KP  AKG Y KS  I ++MGP I++N
Sbjct:   92 ADYVGAEDLVAKIQEGWLDFDVAVATPDMMSLVGRLGRILGPRGLMPNPKTGTVTFDVANAIQEIKAGKVEYRTDKAGIVAAPIGKASFDVERLAANFRALTEALLRAKPAAAKGQYMKSVTISATMGPGIKVN 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GLUDA (50S ribosomal protein L1 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.515e-35
Identity = 71/135 (52.59%), Postives = 94/135 (69.63%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            AD+VG +DL E+++ G + FD+ IA+PDMM  V  LGKILGPRGLMPNPK GTVT ++  A+   K G+VEYRA+K GI+H   GKA F  D L  N  A V +++  KP GAKG Y + A + S+MGP IR+++
Sbjct:   91 ADVVGAEDLAEKVQAGEIAFDRCIATPDMMALVGRLGKILGPRGLMPNPKLGTVTMDVKGAVTAAKSGQVEYRAEKAGIIHAGIGKASFEGDKLAENIRAFVDAVQKAKPTGAKGTYLRKAALSSTMGPGIRVDV 225          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_HELAH3.373e-3549.3050S ribosomal protein L1 OS=Helicobacter acinonych... [more]
RL1_DESAD3.373e-3547.0150S ribosomal protein L1 OS=Desulfovibrio salexige... [more]
RL1_DEIRA3.373e-3550.7550S ribosomal protein L1 OS=Deinococcus radioduran... [more]
RL1_SYNAS4.406e-3552.9950S ribosomal protein L1 OS=Syntrophus aciditrophi... [more]
RL1_GEOSL4.406e-3552.1750S ribosomal protein L1 OS=Geobacter sulfurreduce... [more]
RL1_SELRU5.754e-3550.3750S ribosomal protein L1 OS=Selenomonas ruminantiu... [more]
RL1_DESPS5.754e-3550.7550S ribosomal protein L1 OS=Desulfotalea psychroph... [more]
RL1_ACICJ5.754e-3551.4550S ribosomal protein L1 OS=Acidiphilium cryptum (... [more]
RL1_SYMTH7.515e-3553.7350S ribosomal protein L1 OS=Symbiobacterium thermo... [more]
RL1_GLUDA7.515e-3552.5950S ribosomal protein L1 OS=Gluconacetobacter diaz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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