CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HELAH (50S ribosomal protein L1 OS=Helicobacter acinonychis (strain Sheeba) GN=rplA PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.373e-35 Identity = 70/142 (49.30%), Postives = 98/142 (69.01%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD+VGGDDL E+IK G ++FD +IA+PDMM V +G+ILGP+GLMPNPK GTVT +I +A+ K G+V ++ DK G +H P GK F E+ + N L VK+I KP AKG Y ++A + +M PS+ L+ +E++D K Sbjct: 93 ADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFKVDKKGNIHAPIGKVSFPEEKIKENMLELVKTINRLKPNSAKGKYIRNAALSLTMSPSVSLDAQELMDIK 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESAD (50S ribosomal protein L1 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplA PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.373e-35 Identity = 63/134 (47.01%), Postives = 95/134 (70.90%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VGGDDL+ ++K G+++FDK IA+PDMM KV +G++LGPRGLMPN K GTVT ++ A++E K G+VE++ DK G++H P GK F + LL N + ++++ KP AKG Y K+ + ++MGP +++ Sbjct: 91 ADFVGGDDLVAKVKDGWLDFDKAIATPDMMAKVGQIGRVLGPRGLMPNAKTGTVTFDVASAVKEVKAGRVEFKVDKAGVLHAPIGKVSFGAEKLLENLKSLLETVNKLKPSSAKGTYMKAVAVATTMGPGFKID 224
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DEIRA (50S ribosomal protein L1 OS=Deinococcus radiodurans GN=rplA PE=1 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.373e-35 Identity = 68/134 (50.75%), Postives = 98/134 (73.13%), Query Frame = -1 Query: 367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765 AD+VG D+LIE+I GGFM+FD ++A+PDMM ++ L ++LGPRGL+PNPK+GTV ++ + K G++E+R DKTG+VH P GKA F +L N+ A + ++E KP AKGV+ +SAY+ ++MGPSI L Sbjct: 92 ADVVGSDELIERIAGGFMDFDAVVATPDMMAQIGQKLARLLGPRGLLPNPKSGTVGADVAGMVRGLKAGRIEFRNDKTGVVHAPIGKASFESGNLSANYQALISALEGAKPGTAKGVFLRSAYLTTTMGPSIPL 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNAS (50S ribosomal protein L1 OS=Syntrophus aciditrophicus (strain SB) GN=rplA PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 4.406e-35 Identity = 71/134 (52.99%), Postives = 93/134 (69.40%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD G D+ IE+IK G++EFD++IA+PDMM V LGKILGPRGLMPNPK GTVT ++ A++E K GKVE+R +K GIVH P GK F D L+ N A ++ I KP +KG Y K + S+MGP +R++ Sbjct: 92 ADYAGSDEFIEKIKSGWLEFDRVIATPDMMGNVGKLGKILGPRGLMPNPKVGTVTFDVATAVKEVKAGKVEFRVEKAGIVHSPVGKVSFGPDRLMENIQALIEMIIKLKPATSKGTYIKGIALSSTMGPGVRVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GEOSL (50S ribosomal protein L1 OS=Geobacter sulfurreducens GN=rplA PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 4.406e-35 Identity = 72/138 (52.17%), Postives = 95/138 (68.84%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD VG +DL+ +I+ G+ EFD IA+PDMM V +GK+LGPRGLMPNPK GTVT ++ +A++E K GKVE+R +K GIVH P GK F D L N LA V+++ KP AKG Y K I S+MGP + L+I ++ Sbjct: 92 ADYVGAEDLVTKIQEGWFEFDTAIATPDMMGVVGKIGKLLGPRGLMPNPKVGTVTFDVGRAVKESKAGKVEFRVEKAGIVHAPVGKVSFDADKLKENLLALVEALLKAKPSAAKGTYVKKISISSTMGPGLNLDISDV 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SELRU (50S ribosomal protein L1 OS=Selenomonas ruminantium GN=rplA PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 5.754e-35 Identity = 68/135 (50.37%), Postives = 94/135 (69.63%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 AD VG D+++++I+GG+++FD +A+PDMM V LGK+LGPRGLMPNPK GTVT ++ +A+ E K GKVEYR DK G VH P GKA F + L NF A + ++ KP AKG Y +S + ++MGP I + + Sbjct: 92 ADFVGSDEIVQKIQGGWLDFDVAVATPDMMGTVGRLGKVLGPRGLMPNPKLGTVTMDLTKAVSEIKAGKVEYRTDKAGNVHCPIGKASFDAEKLQQNFQALIDTLNRVKPAAAKGQYMRSITVSATMGPGIPVQL 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESPS (50S ribosomal protein L1 OS=Desulfotalea psychrophila GN=rplA PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 5.754e-35 Identity = 68/134 (50.75%), Postives = 95/134 (70.90%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VGGDDL+E+I+GG++EFDK +A+PDMM V +G++LGPR LMPN K GTVT ++ + IEE K GKV+++ +K GI+H GK F + L N LA ++ I KP +KGVY KS I S+MGP ++++ Sbjct: 92 ADFVGGDDLVEKIQGGWLEFDKTVATPDMMGTVGKIGRVLGPRNLMPNAKLGTVTFDVAKVIEEIKSGKVDFKVEKAGILHAGIGKISFGNEKLTANALAFIEKIIQLKPSSSKGVYLKSVTISSTMGPGVKVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ACICJ (50S ribosomal protein L1 OS=Acidiphilium cryptum (strain JF-5) GN=rplA PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 5.754e-35 Identity = 71/138 (51.45%), Postives = 96/138 (69.57%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD+VG +DL E ++ G +EFD+ IA+PDMM V LGKILGPRGLMPNPK GTVT ++ AI K G+VE+RA+K GI+H GKA F + L+ N A V +I+ KP GAKG Y + A + S+MGP +R+++ + Sbjct: 91 ADVVGAEDLAELVQNGTIEFDRCIATPDMMALVGRLGKILGPRGLMPNPKLGTVTMDVKGAITAAKSGQVEFRAEKAGIIHAGIGKASFEAEKLIENAKALVDAIQKAKPTGAKGTYLQKAALSSTMGPGVRVDVSSL 228
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYMTH (50S ribosomal protein L1 OS=Symbiobacterium thermophilum GN=rplA PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 7.515e-35 Identity = 72/134 (53.73%), Postives = 93/134 (69.40%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG +DL+ +I+ G+++FD +A+PDMM V LG+ILGPRGLMPNPK GTVT ++ AI+E K GKVEYR DK GIV P GKA F + L NF A +++ KP AKG Y KS I ++MGP I++N Sbjct: 92 ADYVGAEDLVAKIQEGWLDFDVAVATPDMMSLVGRLGRILGPRGLMPNPKTGTVTFDVANAIQEIKAGKVEYRTDKAGIVAAPIGKASFDVERLAANFRALTEALLRAKPAAAKGQYMKSVTISATMGPGIKVN 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GLUDA (50S ribosomal protein L1 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplA PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 7.515e-35 Identity = 71/135 (52.59%), Postives = 94/135 (69.63%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 AD+VG +DL E+++ G + FD+ IA+PDMM V LGKILGPRGLMPNPK GTVT ++ A+ K G+VEYRA+K GI+H GKA F D L N A V +++ KP GAKG Y + A + S+MGP IR+++ Sbjct: 91 ADVVGAEDLAEKVQAGEIAFDRCIATPDMMALVGRLGKILGPRGLMPNPKLGTVTMDVKGAVTAAKSGQVEYRAEKAGIIHAGIGKASFEGDKLAENIRAFVDAVQKAKPTGAKGTYLRKAALSSTMGPGIRVDV 225 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |