CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MAGSM (50S ribosomal protein L1 OS=Magnetococcus sp. (strain MC-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.814e-35
Identity = 67/134 (50.00%), Postives = 97/134 (72.39%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG DDL+E+I+GG++EFD+++A+PD+M  V  LGKILGPR +MPNPK GTVT ++ + ++E K G+V +R +K+GI+H   GKA F  +DL+ N  A V+ +   KP  AKG Y K   I S+MGP I+++
Sbjct:   92 ADVVGADDLLEKIQGGWLEFDRVVATPDVMGVVGRLGKILGPRNMMPNPKLGTVTFDVAKVVQEIKAGQVAFRVEKSGIIHAGVGKASFPVEDLVENITALVEQLRRMKPAAAKGTYMKKVSISSTMGPGIKVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GEOMG (50S ribosomal protein L1 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.814e-35
Identity = 71/138 (51.45%), Postives = 96/138 (69.57%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG +DL+ +I+ G+ +FD  IA+PDMM  V  +GK+LGPRGLMPNPK GTVT ++ +A++E K GKVE+R +K GIVH P GKA F  D L  N LA V+++   KP  AKG Y K   + S+MGP + L+I ++
Sbjct:   92 ADHVGAEDLVAKIQEGWFDFDTAIATPDMMGVVGKIGKLLGPRGLMPNPKVGTVTFDVGRAVKESKAGKVEFRVEKAGIVHAPVGKASFDADKLKENLLALVEALVKAKPSAAKGTYIKKISLSSTMGPGLNLDIADV 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GEOLS (50S ribosomal protein L1 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.814e-35
Identity = 71/138 (51.45%), Postives = 94/138 (68.12%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG DDL+ +I+ G+ EFD  IA+PDMM  V  +GK+LGPRGLMPNPK GTVT  + +A++E K GKVE+R +K GIVH P GK  F  + L  N +A V+++   KP  AKG Y K   + S+MGP I L+I ++
Sbjct:   92 ADYVGADDLVAKIQEGWFEFDTAIATPDMMGVVGKIGKLLGPRGLMPNPKVGTVTFEVGRAVKESKAGKVEFRVEKAGIVHAPIGKVSFDAEKLQGNLVALVEALVKAKPSAAKGTYIKKISLSSTMGPGINLDISDV 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_OCEIH (50S ribosomal protein L1 OS=Oceanobacillus iheyensis GN=rplA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.282e-34
Identity = 65/135 (48.15%), Postives = 95/135 (70.37%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            AD VG  D I +I  G+ EFD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT  + +A+ + K GKVEYR DK+  +H+P GK  F +  L+ NF+A  + +   KP+ +KG+Y K+A I S+MGP I++++
Sbjct:   92 ADYVGEGDYINKINQGWFEFDVIVATPDMMAEVGKLGRVLGPKGLMPNPKTGTVTFEVEKAVNDIKAGKVEYRVDKSANIHVPIGKISFDDQKLVDNFVALTEQLVKVKPQSSKGIYMKNASITSTMGPGIKVDV 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SOLUE (50S ribosomal protein L1 OS=Solibacter usitatus (strain Ellin6076) GN=rplA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34
Identity = 69/135 (51.11%), Postives = 96/135 (71.11%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VGG+D++ +I+   + ++D +IA+PDMM  V  LGK+LGPRGLMPNPK GTVT ++ +AI E K GKVE+R DKTGI+H P GK  FS D L+ N  + + ++   KP  AKG Y +SA +CS+MGP + ++
Sbjct:   92 ADFVGGEDMVNKIQSESWTDYDAVIATPDMMRSVGKLGKVLGPRGLMPNPKTGTVTVDVAKAIAEIKAGKVEFRVDKTGIIHAPVGKISFSADKLVENASSLIAAVIKAKPAVAKGKYVRSATVCSTMGPGVAID 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GLUOX (50S ribosomal protein L1 OS=Gluconobacter oxydans GN=rplA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34
Identity = 70/135 (51.85%), Postives = 96/135 (71.11%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            A++VG +DL E+I+ G ++FD+ IA+PDMM  V  LGKILGPRGLMPNP+ GTVT ++  AI   K G+VEYRA+K GI+H   GKA F E  L+ N  A V +++  +P GAKG Y K A + S+MGP +R+++
Sbjct:   91 AEVVGAEDLAEKIQAGEIDFDRCIATPDMMALVGRLGKILGPRGLMPNPRLGTVTMDVKGAITAAKSGQVEYRAEKAGIIHAGVGKASFDEAKLVENINALVDAVQKARPTGAKGTYLKKAALSSTMGPGVRVDV 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOK5 (50S ribosomal protein L1 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34
Identity = 72/141 (51.06%), Postives = 99/141 (70.21%), Query Frame = -1
Query:  346 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG ++ +E+I K  + +FD ++A+PDMM  V  LG+ILGP+GLMPNPK+GTVT ++ +AI+E K GKVEYR DKT IVH+P GK  F    LL NF   +++I   KP  AKG Y KS  + S+MGP I++N  ++L+
Sbjct:   89 ADYVGAEEYVEKIQKENWFDFDVVVATPDMMGVVGRLGRILGPKGLMPNPKSGTVTFDVAKAIQEIKAGKVEYRVDKTSIVHVPIGKKSFEVQKLLDNFRVLMEAIIKAKPSAAKGQYLKSVAVSSTMGPGIKINSVKVLE 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOK1 (50S ribosomal protein L1 OS=Clostridium kluyveri (strain NBRC 12016) GN=rplA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34
Identity = 72/141 (51.06%), Postives = 99/141 (70.21%), Query Frame = -1
Query:  346 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG ++ +E+I K  + +FD ++A+PDMM  V  LG+ILGP+GLMPNPK+GTVT ++ +AI+E K GKVEYR DKT IVH+P GK  F    LL NF   +++I   KP  AKG Y KS  + S+MGP I++N  ++L+
Sbjct:   91 ADYVGAEEYVEKIQKENWFDFDVVVATPDMMGVVGRLGRILGPKGLMPNPKSGTVTFDVAKAIQEIKAGKVEYRVDKTSIVHVPIGKKSFEVQKLLDNFRVLMEAIIKAKPSAAKGQYLKSVAVSSTMGPGIKINSVKVLE 231          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOBM (50S ribosomal protein L1 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34
Identity = 70/141 (49.65%), Postives = 101/141 (71.63%), Query Frame = -1
Query:  346 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG ++L+E+I K  + +FD ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L  NF   ++++   KP  AKG Y KS  I S+MGP I++N  ++L+
Sbjct:   89 ADFVGAEELVEKIQKENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOBL (50S ribosomal protein L1 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34
Identity = 70/141 (49.65%), Postives = 101/141 (71.63%), Query Frame = -1
Query:  346 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG ++L+E+I K  + +FD ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L  NF   ++++   KP  AKG Y KS  I S+MGP I++N  ++L+
Sbjct:   89 ADFVGAEELVEKIQKENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_MAGSM9.814e-3550.0050S ribosomal protein L1 OS=Magnetococcus sp. (str... [more]
RL1_GEOMG9.814e-3551.4550S ribosomal protein L1 OS=Geobacter metallireduc... [more]
RL1_GEOLS9.814e-3551.4550S ribosomal protein L1 OS=Geobacter lovleyi (str... [more]
RL1_OCEIH1.282e-3448.1550S ribosomal protein L1 OS=Oceanobacillus iheyens... [more]
RL1_SOLUE1.674e-3451.1150S ribosomal protein L1 OS=Solibacter usitatus (s... [more]
RL1_GLUOX1.674e-3451.8550S ribosomal protein L1 OS=Gluconobacter oxydans ... [more]
RL1_CLOK51.674e-3451.0650S ribosomal protein L1 OS=Clostridium kluyveri (... [more]
RL1_CLOK11.674e-3451.0650S ribosomal protein L1 OS=Clostridium kluyveri (... [more]
RL1_CLOBM1.674e-3449.6550S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOBL1.674e-3449.6550S ribosomal protein L1 OS=Clostridium botulinum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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