CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOBK (50S ribosomal protein L1 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplA PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34 Identity = 70/141 (49.65%), Postives = 101/141 (71.63%), Query Frame = -1 Query: 346 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VG ++L+E+I K + +FD ++A+PDMM V LG++LGP+GLMPNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L NF ++++ KP AKG Y KS I S+MGP I++N ++L+ Sbjct: 89 ADFVGAEELVEKIQKENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOBJ (50S ribosomal protein L1 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplA PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34 Identity = 70/141 (49.65%), Postives = 101/141 (71.63%), Query Frame = -1 Query: 346 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VG ++L+E+I K + +FD ++A+PDMM V LG++LGP+GLMPNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L NF ++++ KP AKG Y KS I S+MGP I++N ++L+ Sbjct: 89 ADFVGAEELVEKIQKENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOBH (50S ribosomal protein L1 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplA PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34 Identity = 70/141 (49.65%), Postives = 101/141 (71.63%), Query Frame = -1 Query: 346 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VG ++L+E+I K + +FD ++A+PDMM V LG++LGP+GLMPNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L NF ++++ KP AKG Y KS I S+MGP I++N ++L+ Sbjct: 89 ADFVGAEELVEKIQKENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOB6 (50S ribosomal protein L1 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplA PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34 Identity = 71/141 (50.35%), Postives = 100/141 (70.92%), Query Frame = -1 Query: 346 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VG ++L+E+I K + +FD ++A+PDMM V LG++LGP+GLMPNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GKA F E L NF ++++ KP AKG Y KS I S+MGP I++N ++L+ Sbjct: 89 ADFVGAEELVEKIQKENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKASFGEGKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOB1 (50S ribosomal protein L1 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplA PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34 Identity = 70/141 (49.65%), Postives = 101/141 (71.63%), Query Frame = -1 Query: 346 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VG ++L+E+I K + +FD ++A+PDMM V LG++LGP+GLMPNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L NF ++++ KP AKG Y KS I S+MGP I++N ++L+ Sbjct: 89 ADFVGAEELVEKIQKENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THEM4 (50S ribosomal protein L1 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplA PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34 Identity = 71/135 (52.59%), Postives = 96/135 (71.11%), Query Frame = -1 Query: 364 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG +DL E+I K GF++FD IA+PDMM + LGKILGPRGLMPNPKAGTVT ++ A+++FKKG++E R DKTG +HIP GKA F ++ L N +A + + KP G KG + K + ++MGP I++N Sbjct: 92 ADYVGAEDLAEKIQKEGFLDFDVAIATPDMMKIIGRLGKILGPRGLMPNPKAGTVTNDVAAAVKDFKKGRMEIRTDKTGNLHIPVGKASFEKEKLTENIKSAYEQVLNLKPTGVKGTFIKKVVLSTTMGPGIKVN 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THEFY (50S ribosomal protein L1 OS=Thermobifida fusca (strain YX) GN=rplA PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34 Identity = 68/131 (51.91%), Postives = 93/131 (70.99%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD VG DDL+E+I+ GF++FD ++A+PDMM K+ LG+ILGPRGLMPNPK GTVT ++ +A+ + K GK+E+R D+ G +H+ GK F E LL N+LAAV + KP AKG Y K + ++MGP I Sbjct: 91 ADYVGDDDLVERIQQGFLDFDAVVATPDMMGKIGRLGRILGPRGLMPNPKTGTVTMDVAKAVSDIKGGKIEFRVDRHGNLHLIIGKVSFDEQKLLENYLAAVDEVLRLKPSAAKGRYIKKITLTTTMGPGI 221
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SORC5 (50S ribosomal protein L1 OS=Sorangium cellulosum (strain So ce56) GN=rplA PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34 Identity = 69/134 (51.49%), Postives = 96/134 (71.64%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG DL+ +++ GFM+FD++IA+PDMM V LG+ILGPRGLMPNPK GTVT ++ A+ E K GKVEYR +K GIVH GK F+E+ L +N A ++++ KP AKG+Y +S + S+MGP +R++ Sbjct: 92 ADFVGEADLVNKVQEGFMDFDRVIATPDMMGLVGKLGRILGPRGLMPNPKVGTVTFDVKTAVSEAKAGKVEYRVEKAGIVHARIGKVSFAENALHVNADALIQALVRAKPATAKGIYLRSITMSSTMGPGVRID 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYXXD (50S ribosomal protein L1 OS=Myxococcus xanthus (strain DK 1622) GN=rplA PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34 Identity = 73/138 (52.90%), Postives = 97/138 (70.29%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD+VG +DL ++I+ GF++FD +IA+PDMM V LGK+LGPRGLMPNPK GTVT ++ +AI + K GKV++RA+K GIVH GK+ F + L NF A V + KP AKGVY + I SSMGP I+L+ E+ Sbjct: 95 ADVVGAEDLQKRIEEGFLDFDTVIATPDMMGVVGRLGKVLGPRGLMPNPKVGTVTMDVAKAIRDAKGGKVDFRAEKAGIVHAKLGKSSFEVEKLEANFNALVDLVMKLKPAAAKGVYLQGIAISSSMGPGIKLDTMEI 232
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LEPBP (50S ribosomal protein L1 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=rplA PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34 Identity = 67/140 (47.86%), Postives = 100/140 (71.43%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VG DLIE++ GG+ +FD +A+PDMM +V LG +LG +GLMP PKAGTVTT++ +A++E K G++EYR DK G+VH+ GK FS+D L N A V ++ +KP AKG Y KS + ++MG +++++KE+++ Sbjct: 88 ADFVGDMDLIEKVSGGWTDFDACVATPDMMKEVGKLGPVLGRKGLMPKPKAGTVTTDVSKAVKELKAGRIEYRPDKGGVVHLGVGKCSFSDDKLSDNINAVVAALMKDKPSDAKGDYLKSFSVAATMGIGVKVDVKELVN 227 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |