CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOBK (50S ribosomal protein L1 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34
Identity = 70/141 (49.65%), Postives = 101/141 (71.63%), Query Frame = -1
Query:  346 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG ++L+E+I K  + +FD ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L  NF   ++++   KP  AKG Y KS  I S+MGP I++N  ++L+
Sbjct:   89 ADFVGAEELVEKIQKENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOBJ (50S ribosomal protein L1 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34
Identity = 70/141 (49.65%), Postives = 101/141 (71.63%), Query Frame = -1
Query:  346 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG ++L+E+I K  + +FD ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L  NF   ++++   KP  AKG Y KS  I S+MGP I++N  ++L+
Sbjct:   89 ADFVGAEELVEKIQKENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOBH (50S ribosomal protein L1 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34
Identity = 70/141 (49.65%), Postives = 101/141 (71.63%), Query Frame = -1
Query:  346 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG ++L+E+I K  + +FD ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L  NF   ++++   KP  AKG Y KS  I S+MGP I++N  ++L+
Sbjct:   89 ADFVGAEELVEKIQKENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOB6 (50S ribosomal protein L1 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34
Identity = 71/141 (50.35%), Postives = 100/141 (70.92%), Query Frame = -1
Query:  346 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG ++L+E+I K  + +FD ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GKA F E  L  NF   ++++   KP  AKG Y KS  I S+MGP I++N  ++L+
Sbjct:   89 ADFVGAEELVEKIQKENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKASFGEGKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOB1 (50S ribosomal protein L1 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34
Identity = 70/141 (49.65%), Postives = 101/141 (71.63%), Query Frame = -1
Query:  346 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG ++L+E+I K  + +FD ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L  NF   ++++   KP  AKG Y KS  I S+MGP I++N  ++L+
Sbjct:   89 ADFVGAEELVEKIQKENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THEM4 (50S ribosomal protein L1 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34
Identity = 71/135 (52.59%), Postives = 96/135 (71.11%), Query Frame = -1
Query:  364 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG +DL E+I K GF++FD  IA+PDMM  +  LGKILGPRGLMPNPKAGTVT ++  A+++FKKG++E R DKTG +HIP GKA F ++ L  N  +A + +   KP G KG + K   + ++MGP I++N
Sbjct:   92 ADYVGAEDLAEKIQKEGFLDFDVAIATPDMMKIIGRLGKILGPRGLMPNPKAGTVTNDVAAAVKDFKKGRMEIRTDKTGNLHIPVGKASFEKEKLTENIKSAYEQVLNLKPTGVKGTFIKKVVLSTTMGPGIKVN 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THEFY (50S ribosomal protein L1 OS=Thermobifida fusca (strain YX) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34
Identity = 68/131 (51.91%), Postives = 93/131 (70.99%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD VG DDL+E+I+ GF++FD ++A+PDMM K+  LG+ILGPRGLMPNPK GTVT ++ +A+ + K GK+E+R D+ G +H+  GK  F E  LL N+LAAV  +   KP  AKG Y K   + ++MGP I
Sbjct:   91 ADYVGDDDLVERIQQGFLDFDAVVATPDMMGKIGRLGRILGPRGLMPNPKTGTVTMDVAKAVSDIKGGKIEFRVDRHGNLHLIIGKVSFDEQKLLENYLAAVDEVLRLKPSAAKGRYIKKITLTTTMGPGI 221          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SORC5 (50S ribosomal protein L1 OS=Sorangium cellulosum (strain So ce56) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34
Identity = 69/134 (51.49%), Postives = 96/134 (71.64%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG  DL+ +++ GFM+FD++IA+PDMM  V  LG+ILGPRGLMPNPK GTVT ++  A+ E K GKVEYR +K GIVH   GK  F+E+ L +N  A ++++   KP  AKG+Y +S  + S+MGP +R++
Sbjct:   92 ADFVGEADLVNKVQEGFMDFDRVIATPDMMGLVGKLGRILGPRGLMPNPKVGTVTFDVKTAVSEAKAGKVEYRVEKAGIVHARIGKVSFAENALHVNADALIQALVRAKPATAKGIYLRSITMSSTMGPGVRID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYXXD (50S ribosomal protein L1 OS=Myxococcus xanthus (strain DK 1622) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34
Identity = 73/138 (52.90%), Postives = 97/138 (70.29%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD+VG +DL ++I+ GF++FD +IA+PDMM  V  LGK+LGPRGLMPNPK GTVT ++ +AI + K GKV++RA+K GIVH   GK+ F  + L  NF A V  +   KP  AKGVY +   I SSMGP I+L+  E+
Sbjct:   95 ADVVGAEDLQKRIEEGFLDFDTVIATPDMMGVVGRLGKVLGPRGLMPNPKVGTVTMDVAKAIRDAKGGKVDFRAEKAGIVHAKLGKSSFEVEKLEANFNALVDLVMKLKPAAAKGVYLQGIAISSSMGPGIKLDTMEI 232          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LEPBP (50S ribosomal protein L1 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34
Identity = 67/140 (47.86%), Postives = 100/140 (71.43%), Query Frame = -1
Query:  346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG  DLIE++ GG+ +FD  +A+PDMM +V  LG +LG +GLMP PKAGTVTT++ +A++E K G++EYR DK G+VH+  GK  FS+D L  N  A V ++  +KP  AKG Y KS  + ++MG  +++++KE+++
Sbjct:   88 ADFVGDMDLIEKVSGGWTDFDACVATPDMMKEVGKLGPVLGRKGLMPKPKAGTVTTDVSKAVKELKAGRIEYRPDKGGVVHLGVGKCSFSDDKLSDNINAVVAALMKDKPSDAKGDYLKSFSVAATMGIGVKVDVKELVN 227          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_CLOBK1.674e-3449.6550S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOBJ1.674e-3449.6550S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOBH1.674e-3449.6550S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOB61.674e-3450.3550S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOB11.674e-3449.6550S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_THEM42.186e-3452.5950S ribosomal protein L1 OS=Thermosipho melanesien... [more]
RL1_THEFY2.186e-3451.9150S ribosomal protein L1 OS=Thermobifida fusca (st... [more]
RL1_SORC52.186e-3451.4950S ribosomal protein L1 OS=Sorangium cellulosum (... [more]
RL1_MYXXD2.186e-3452.9050S ribosomal protein L1 OS=Myxococcus xanthus (st... [more]
RL1_LEPBP2.186e-3447.8650S ribosomal protein L1 OS=Leptospira biflexa ser... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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