CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LEPBA (50S ribosomal protein L1 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=rplA PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34 Identity = 67/140 (47.86%), Postives = 100/140 (71.43%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VG DLIE++ GG+ +FD +A+PDMM +V LG +LG +GLMP PKAGTVTT++ +A++E K G++EYR DK G+VH+ GK FS+D L N A V ++ +KP AKG Y KS + ++MG +++++KE+++ Sbjct: 88 ADFVGDMDLIEKVSGGWTDFDACVATPDMMKEVGKLGPVLGRKGLMPKPKAGTVTTDVSKAVKELKAGRIEYRPDKGGVVHLGVGKCSFSDDKLSDNINAVVAALMKDKPSDAKGDYLKSFSVAATMGIGVKVDVKELVN 227
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ERYLH (50S ribosomal protein L1 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplA PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34 Identity = 67/138 (48.55%), Postives = 98/138 (71.01%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD VG +DL+E ++ G +++D++IA+PDMM V LGK+LGP+GLMPNPK GTVT N+ QA+++ K G+VE+R +K GI+H GK F ++DL NF + +I KP GAKG Y K + SSMGP +++++ E+ Sbjct: 90 ADKVGAEDLMEDMQNGNLDYDRVIATPDMMGVVGRLGKVLGPKGLMPNPKLGTVTPNVEQAVKDAKGGQVEFRVEKMGIIHSGIGKMSFKDEDLKANFKSFTDAIVKAKPSGAKGKYVKKVSLTSSMGPGLKIDLAEV 227
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CARHZ (50S ribosomal protein L1 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplA PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34 Identity = 69/134 (51.49%), Postives = 93/134 (69.40%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG ++ IE+I G+++FD ++A+PDMM V LGKILGP+GLMP+PK GTVT + +AI E K GK+EYR DK GIVH+P GK F + L+ NF + ++ KP GAKG Y K + S+MGP I++N Sbjct: 92 ADYVGAEEYIEKIAQGWIDFDVVVATPDMMGAVGRLGKILGPKGLMPSPKTGTVTFEVAKAIAEIKAGKIEYRVDKAGIVHVPIGKVSFPVEKLVENFNTLMDALIKAKPAGAKGQYLKGVTVSSTMGPGIKIN 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SULSY (50S ribosomal protein L1 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplA PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.856e-34 Identity = 70/139 (50.36%), Postives = 100/139 (71.94%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD GG+++I +I +++FD +IA+PDMM K+A LGKILGPRGLMPNPK GTVTT++ +A+ E KKG+VE++ DKTG +H+P GK F + L N LA V ++ KP GAKG Y ++ + ++M PS++LN E+ Sbjct: 95 ADYAGGEEIINKIANENWIDFDIVIATPDMMPKLAKLGKILGPRGLMPNPKVGTVTTDVKRAVTEAKKGRVEFKVDKTGNLHVPVGKISFEDHKLKENILAVVDAVLKAKPPGAKGQYIRNVVLKTTMSPSVKLNPAEL 233
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RICAE (50S ribosomal protein L1 OS=Rickettsia africae (strain ESF-5) GN=rplA PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.856e-34 Identity = 69/135 (51.11%), Postives = 97/135 (71.85%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 ADLVG ++I++IK G + FD IA+PDMMV + S+ +ILGP+GLMPNPK GTVT +I AI+ K G+VEYRA+K GI+H GK FS+ DLL N A ++++ KP G KG Y K+ Y+ S+MG S+++++ Sbjct: 101 ADLVGSTNIIDEIKAGKINFDVCIATPDMMVAIGSVARILGPKGLMPNPKLGTVTLDIKNAIKNAKSGQVEYRAEKAGIIHAGLGKLSFSDQDLLKNLNAFIEAVIKAKPAGLKGSYLKAMYLSSTMGASVQIDL 235
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESOH (50S ribosomal protein L1 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rplA PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.856e-34 Identity = 68/134 (50.75%), Postives = 92/134 (68.66%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG D+LIE IK G+ FDK +A+PDMM V +GK+LGPRGLMPN K GTVT ++ +A+ + K GK+++R DK GIVH P GKA F + L N LA ++ + A KP +KG Y +S + +SMG +RL+ Sbjct: 92 ADFVGNDELIEDIKNGWFGFDKAVATPDMMGAVGKIGKLLGPRGLMPNAKTGTVTFDVARAVNDLKAGKIDFRVDKAGIVHAPLGKASFGTEKLQDNMLALLRMLVAMKPATSKGAYMRSLAVSTSMGAGVRLD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THEPX (50S ribosomal protein L1 OS=Thermoanaerobacter sp. (strain X514) GN=rplA PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.729e-34 Identity = 68/135 (50.37%), Postives = 98/135 (72.59%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG ++L+ +I+ + ++D ++A+PDMM V LGKILGP+GLMPNPK+GTVT ++ +AI+E K GK+EYR DK GI+H+P GK F ++ LL NF A + +I +KP AKG Y KS + S+MGP +++N Sbjct: 91 ADYVGAEELVAKIQNENWFDYDVVVATPDMMGVVGRLGKILGPKGLMPNPKSGTVTFDLEKAIKEIKAGKIEYRVDKAGIIHVPIGKKSFGKEKLLENFRAVMDAIIKSKPAAAKGQYIKSVVLSSTMGPGVKVN 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THEP3 (50S ribosomal protein L1 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplA PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.729e-34 Identity = 68/135 (50.37%), Postives = 98/135 (72.59%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG ++L+ +I+ + ++D ++A+PDMM V LGKILGP+GLMPNPK+GTVT ++ +AI+E K GK+EYR DK GI+H+P GK F ++ LL NF A + +I +KP AKG Y KS + S+MGP +++N Sbjct: 91 ADYVGAEELVAKIQNENWFDYDVVVATPDMMGAVGRLGKILGPKGLMPNPKSGTVTFDLEKAIKEIKAGKIEYRVDKAGIIHVPIGKKSFGKEKLLENFRAVMDAIIKSKPAAAKGQYIKSLVLSSTMGPGVKVN 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MAGSA (50S ribosomal protein L1 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplA PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.729e-34 Identity = 69/135 (51.11%), Postives = 93/135 (68.89%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 AD+VG DL + G M+FD++IA+PD+M V LGK+LGPRGLMPNPK GTVT N+ +A+ K G+V++R +K GIVH GKA FSE+ L N A V +I KP+GAKG Y K + S+MGP ++L++ Sbjct: 92 ADIVGEQDLFDACNAGNMDFDRVIATPDLMGLVGRLGKVLGPRGLMPNPKLGTVTANVTEAVRAAKAGQVQFRVEKAGIVHAGIGKASFSEEKLAENVKAFVDAITKAKPQGAKGTYLKKVSLSSTMGPGVKLDV 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LACLA (50S ribosomal protein L1 OS=Lactococcus lactis subsp. lactis GN=rplA PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.729e-34 Identity = 67/134 (50.00%), Postives = 93/134 (69.40%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG D+L+ +I GG+++FD +IA+PDMM V LG++LGPR LMPNPK GTVT ++ +A+EE K GKV YRADK G VH+P GK F + L+ NF A I A KP +KG Y + + ++MGP ++++ Sbjct: 92 ADFVGSDELVAKINGGWLDFDVVIATPDMMAVVGRLGRVLGPRNLMPNPKTGTVTMDVTKAVEESKAGKVNYRADKAGNVHVPIGKVSFDTEKLVENFKALNSVIAAAKPAASKGAYITNLSVTTTMGPGVKVD 225 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |