CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LEPBA (50S ribosomal protein L1 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34
Identity = 67/140 (47.86%), Postives = 100/140 (71.43%), Query Frame = -1
Query:  346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG  DLIE++ GG+ +FD  +A+PDMM +V  LG +LG +GLMP PKAGTVTT++ +A++E K G++EYR DK G+VH+  GK  FS+D L  N  A V ++  +KP  AKG Y KS  + ++MG  +++++KE+++
Sbjct:   88 ADFVGDMDLIEKVSGGWTDFDACVATPDMMKEVGKLGPVLGRKGLMPKPKAGTVTTDVSKAVKELKAGRIEYRPDKGGVVHLGVGKCSFSDDKLSDNINAVVAALMKDKPSDAKGDYLKSFSVAATMGIGVKVDVKELVN 227          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ERYLH (50S ribosomal protein L1 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34
Identity = 67/138 (48.55%), Postives = 98/138 (71.01%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG +DL+E ++ G +++D++IA+PDMM  V  LGK+LGP+GLMPNPK GTVT N+ QA+++ K G+VE+R +K GI+H   GK  F ++DL  NF +   +I   KP GAKG Y K   + SSMGP +++++ E+
Sbjct:   90 ADKVGAEDLMEDMQNGNLDYDRVIATPDMMGVVGRLGKVLGPKGLMPNPKLGTVTPNVEQAVKDAKGGQVEFRVEKMGIIHSGIGKMSFKDEDLKANFKSFTDAIVKAKPSGAKGKYVKKVSLTSSMGPGLKIDLAEV 227          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CARHZ (50S ribosomal protein L1 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34
Identity = 69/134 (51.49%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG ++ IE+I  G+++FD ++A+PDMM  V  LGKILGP+GLMP+PK GTVT  + +AI E K GK+EYR DK GIVH+P GK  F  + L+ NF   + ++   KP GAKG Y K   + S+MGP I++N
Sbjct:   92 ADYVGAEEYIEKIAQGWIDFDVVVATPDMMGAVGRLGKILGPKGLMPSPKTGTVTFEVAKAIAEIKAGKIEYRVDKAGIVHVPIGKVSFPVEKLVENFNTLMDALIKAKPAGAKGQYLKGVTVSSTMGPGIKIN 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SULSY (50S ribosomal protein L1 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.856e-34
Identity = 70/139 (50.36%), Postives = 100/139 (71.94%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD  GG+++I +I    +++FD +IA+PDMM K+A LGKILGPRGLMPNPK GTVTT++ +A+ E KKG+VE++ DKTG +H+P GK  F +  L  N LA V ++   KP GAKG Y ++  + ++M PS++LN  E+
Sbjct:   95 ADYAGGEEIINKIANENWIDFDIVIATPDMMPKLAKLGKILGPRGLMPNPKVGTVTTDVKRAVTEAKKGRVEFKVDKTGNLHVPVGKISFEDHKLKENILAVVDAVLKAKPPGAKGQYIRNVVLKTTMSPSVKLNPAEL 233          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RICAE (50S ribosomal protein L1 OS=Rickettsia africae (strain ESF-5) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.856e-34
Identity = 69/135 (51.11%), Postives = 97/135 (71.85%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            ADLVG  ++I++IK G + FD  IA+PDMMV + S+ +ILGP+GLMPNPK GTVT +I  AI+  K G+VEYRA+K GI+H   GK  FS+ DLL N  A ++++   KP G KG Y K+ Y+ S+MG S+++++
Sbjct:  101 ADLVGSTNIIDEIKAGKINFDVCIATPDMMVAIGSVARILGPKGLMPNPKLGTVTLDIKNAIKNAKSGQVEYRAEKAGIIHAGLGKLSFSDQDLLKNLNAFIEAVIKAKPAGLKGSYLKAMYLSSTMGASVQIDL 235          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESOH (50S ribosomal protein L1 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.856e-34
Identity = 68/134 (50.75%), Postives = 92/134 (68.66%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG D+LIE IK G+  FDK +A+PDMM  V  +GK+LGPRGLMPN K GTVT ++ +A+ + K GK+++R DK GIVH P GKA F  + L  N LA ++ + A KP  +KG Y +S  + +SMG  +RL+
Sbjct:   92 ADFVGNDELIEDIKNGWFGFDKAVATPDMMGAVGKIGKLLGPRGLMPNAKTGTVTFDVARAVNDLKAGKIDFRVDKAGIVHAPLGKASFGTEKLQDNMLALLRMLVAMKPATSKGAYMRSLAVSTSMGAGVRLD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THEPX (50S ribosomal protein L1 OS=Thermoanaerobacter sp. (strain X514) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.729e-34
Identity = 68/135 (50.37%), Postives = 98/135 (72.59%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG ++L+ +I+   + ++D ++A+PDMM  V  LGKILGP+GLMPNPK+GTVT ++ +AI+E K GK+EYR DK GI+H+P GK  F ++ LL NF A + +I  +KP  AKG Y KS  + S+MGP +++N
Sbjct:   91 ADYVGAEELVAKIQNENWFDYDVVVATPDMMGVVGRLGKILGPKGLMPNPKSGTVTFDLEKAIKEIKAGKIEYRVDKAGIIHVPIGKKSFGKEKLLENFRAVMDAIIKSKPAAAKGQYIKSVVLSSTMGPGVKVN 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THEP3 (50S ribosomal protein L1 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.729e-34
Identity = 68/135 (50.37%), Postives = 98/135 (72.59%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG ++L+ +I+   + ++D ++A+PDMM  V  LGKILGP+GLMPNPK+GTVT ++ +AI+E K GK+EYR DK GI+H+P GK  F ++ LL NF A + +I  +KP  AKG Y KS  + S+MGP +++N
Sbjct:   91 ADYVGAEELVAKIQNENWFDYDVVVATPDMMGAVGRLGKILGPKGLMPNPKSGTVTFDLEKAIKEIKAGKIEYRVDKAGIIHVPIGKKSFGKEKLLENFRAVMDAIIKSKPAAAKGQYIKSLVLSSTMGPGVKVN 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MAGSA (50S ribosomal protein L1 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.729e-34
Identity = 69/135 (51.11%), Postives = 93/135 (68.89%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            AD+VG  DL +    G M+FD++IA+PD+M  V  LGK+LGPRGLMPNPK GTVT N+ +A+   K G+V++R +K GIVH   GKA FSE+ L  N  A V +I   KP+GAKG Y K   + S+MGP ++L++
Sbjct:   92 ADIVGEQDLFDACNAGNMDFDRVIATPDLMGLVGRLGKVLGPRGLMPNPKLGTVTANVTEAVRAAKAGQVQFRVEKAGIVHAGIGKASFSEEKLAENVKAFVDAITKAKPQGAKGTYLKKVSLSSTMGPGVKLDV 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LACLA (50S ribosomal protein L1 OS=Lactococcus lactis subsp. lactis GN=rplA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.729e-34
Identity = 67/134 (50.00%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG D+L+ +I GG+++FD +IA+PDMM  V  LG++LGPR LMPNPK GTVT ++ +A+EE K GKV YRADK G VH+P GK  F  + L+ NF A    I A KP  +KG Y  +  + ++MGP ++++
Sbjct:   92 ADFVGSDELVAKINGGWLDFDVVIATPDMMAVVGRLGRVLGPRNLMPNPKTGTVTMDVTKAVEESKAGKVNYRADKAGNVHVPIGKVSFDTEKLVENFKALNSVIAAAKPAASKGAYITNLSVTTTMGPGVKVD 225          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_LEPBA2.186e-3447.8650S ribosomal protein L1 OS=Leptospira biflexa ser... [more]
RL1_ERYLH2.186e-3448.5550S ribosomal protein L1 OS=Erythrobacter litorali... [more]
RL1_CARHZ2.186e-3451.4950S ribosomal protein L1 OS=Carboxydothermus hydro... [more]
RL1_SULSY2.856e-3450.3650S ribosomal protein L1 OS=Sulfurihydrogenibium s... [more]
RL1_RICAE2.856e-3451.1150S ribosomal protein L1 OS=Rickettsia africae (st... [more]
RL1_DESOH2.856e-3450.7550S ribosomal protein L1 OS=Desulfococcus oleovora... [more]
RL1_THEPX3.729e-3450.3750S ribosomal protein L1 OS=Thermoanaerobacter sp.... [more]
RL1_THEP33.729e-3450.3750S ribosomal protein L1 OS=Thermoanaerobacter pse... [more]
RL1_MAGSA3.729e-3451.1150S ribosomal protein L1 OS=Magnetospirillum magne... [more]
RL1_LACLA3.729e-3450.0050S ribosomal protein L1 OS=Lactococcus lactis sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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