CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAMFF (50S ribosomal protein L1 OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=rplA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.559e-32
Identity = 67/142 (47.18%), Postives = 95/142 (66.90%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            AD+VG +D +++I  G + FD LIA+P++M  V  +G++LGP+GLMPNPK GTVT ++ QAI+  K G+V +R DK G +H   GK  FS+D L  N  A +K I  +KP  +KG Y KSA +  +M PSI L  +E++D K
Sbjct:   93 ADIVGAEDFVDEIAKGVINFDVLIATPNLMGLVGKIGRLLGPKGLMPNPKTGTVTMDVAQAIKNAKGGQVNFRVDKQGNIHAGLGKVSFSKDQLNDNISAFIKMINKHKPAASKGRYIKSAALSLTMSPSITLEPQELMDLK 234          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BORA1 (50S ribosomal protein L1 OS=Bordetella avium (strain 197N) GN=rplA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.559e-32
Identity = 67/138 (48.55%), Postives = 92/138 (66.67%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            A++VG DDL EQIK G M+FD +IASPD M  V +LG+ILGPRGLMPNPK GTVT ++  A++  K G+V+YR DK GI+H   G+A F  + L  N  A V +++  +P  AKG+Y +   + S+MG   R+ I  +
Sbjct:   92 AEVVGLDDLAEQIKAGQMDFDVVIASPDTMRVVGALGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKAGIIHATIGRASFGIEQLQTNLAALVDALQKARPAAAKGIYLRKIAVSSTMGGGARVEIASL 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BEUC1 (50S ribosomal protein L1 OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=rplA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.559e-32
Identity = 63/134 (47.01%), Postives = 94/134 (70.15%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VGGD+LIE++ GG+++FD  +A+PD+M KV  LG++LGPRGLMPNP+ GTVT ++ +A+EE K GK+++R DK   +H+  GKA F E  L+ N+ + +  +   KP  +KG Y   A + ++MGP I L+
Sbjct:   92 ADEVGGDELIEKVAGGYVDFDAAVATPDLMGKVGRLGRVLGPRGLMPNPRTGTVTMDVAKAVEEIKGGKIDFRVDKHANLHVVVGKASFDETALVENYASVLDEVLRLKPSSSKGRYIVKATLSTTMGPGIPLD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ALHEH (50S ribosomal protein L1 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.559e-32
Identity = 65/138 (47.10%), Postives = 91/138 (65.94%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD+VG DDL EQ+KGG ++FD ++A+PD M  V  LG ILGPRGLMPNPK GTVT ++  A++  K G+V YR DK GI+H   GK DF  + L  N  A +  ++  KP  +KGVY K   + ++MGP + +++  +
Sbjct:   92 ADIVGMDDLAEQVKGGNLDFDVVVAAPDAMGVVGRLGPILGPRGLMPNPKVGTVTPDVAGAVKNAKAGQVRYRTDKGGIIHCAIGKVDFEVEALQQNLQALITDLQKLKPANSKGVYLKKVAVSTTMGPGLAVDLASL 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHESW (50S ribosomal protein L1 OS=Shewanella sp. (strain W3-18-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 70/134 (52.24%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL EQIK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF+   L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMDDLAEQIKAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALISALKKAKPAVAKGVYVKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHEPC (50S ribosomal protein L1 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 70/134 (52.24%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL EQIK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF+   L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMDDLAEQIKAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALISALKKAKPAVAKGVYVKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHOSK (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            AD+VG +DL+E I+ G +EFD+ IA+PDMM  V  LGKILGPR LMPNPK GTVT ++  A+E  K G+V+++ +K G++H   GK  F  D L  N  A V ++   KP GAKG Y K   + S+MGP + +++
Sbjct:   92 ADIVGAEDLMETIQSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKSAVEAAKGGEVQFKVEKAGVIHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGTYLKKVSLSSTMGPGVSVDL 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHOS4 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            AD+VG +DL+E I+ G +EFD+ IA+PDMM  V  LGKILGPR LMPNPK GTVT ++  A+E  K G+V+++ +K G++H   GK  F  D L  N  A V ++   KP GAKG Y K   + S+MGP + +++
Sbjct:   92 ADIVGAEDLMETIQSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKSAVEAAKGGEVQFKVEKAGVIHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGTYLKKVSLSSTMGPGVSVDL 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHOS1 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rplA1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            AD+VG +DL+E I+ G +EFD+ IA+PDMM  V  LGKILGPR LMPNPK GTVT ++  A+E  K G+V+++ +K G++H   GK  F  D L  N  A V ++   KP GAKG Y K   + S+MGP + +++
Sbjct:   92 ADIVGAEDLMETIQSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKSAVEAAKGGEVQFKVEKAGVIHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGTYLKKVSLSSTMGPGVSVDL 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ORITI (50S ribosomal protein L1 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 64/140 (45.71%), Postives = 94/140 (67.14%), Query Frame = -1
Query:  346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD+VG  D+IE IK G +++D  I +P MMV V+ + +ILGP+GLMPNPK GTVT ++   +++ K G+VE++ DK G +H   GK  FS D+++ N  A V +I  +KP  AKG Y K  Y+ ++MGPS+RL+I    +
Sbjct:  104 ADIVGSLDIIEAIKSGNIDYDVYITTPAMMVAVSQVARILGPKGLMPNPKLGTVTNDVADVVKKVKSGQVEFKVDKAGNIHAGIGKISFSIDEIIANINAFVSAIIKSKPSEAKGAYLKGIYLSTTMGPSVRLDISSFTE 243          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_CAMFF4.559e-3247.1850S ribosomal protein L1 OS=Campylobacter fetus su... [more]
RL1_BORA14.559e-3248.5550S ribosomal protein L1 OS=Bordetella avium (stra... [more]
RL1_BEUC14.559e-3247.0150S ribosomal protein L1 OS=Beutenbergia cavernae ... [more]
RL1_ALHEH4.559e-3247.1050S ribosomal protein L1 OS=Alkalilimnicola ehrlic... [more]
RL1_SHESW5.954e-3252.2450S ribosomal protein L1 OS=Shewanella sp. (strain... [more]
RL1_SHEPC5.954e-3252.2450S ribosomal protein L1 OS=Shewanella putrefacien... [more]
RL1_RHOSK5.954e-3248.1550S ribosomal protein L1 OS=Rhodobacter sphaeroide... [more]
RL1_RHOS45.954e-3248.1550S ribosomal protein L1 OS=Rhodobacter sphaeroide... [more]
RL1_RHOS15.954e-3248.1550S ribosomal protein L1 OS=Rhodobacter sphaeroide... [more]
RL1_ORITI5.954e-3245.7150S ribosomal protein L1 OS=Orientia tsutsugamushi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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