CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAMFF (50S ribosomal protein L1 OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=rplA PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 4.559e-32 Identity = 67/142 (47.18%), Postives = 95/142 (66.90%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD+VG +D +++I G + FD LIA+P++M V +G++LGP+GLMPNPK GTVT ++ QAI+ K G+V +R DK G +H GK FS+D L N A +K I +KP +KG Y KSA + +M PSI L +E++D K Sbjct: 93 ADIVGAEDFVDEIAKGVINFDVLIATPNLMGLVGKIGRLLGPKGLMPNPKTGTVTMDVAQAIKNAKGGQVNFRVDKQGNIHAGLGKVSFSKDQLNDNISAFIKMINKHKPAASKGRYIKSAALSLTMSPSITLEPQELMDLK 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BORA1 (50S ribosomal protein L1 OS=Bordetella avium (strain 197N) GN=rplA PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 4.559e-32 Identity = 67/138 (48.55%), Postives = 92/138 (66.67%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 A++VG DDL EQIK G M+FD +IASPD M V +LG+ILGPRGLMPNPK GTVT ++ A++ K G+V+YR DK GI+H G+A F + L N A V +++ +P AKG+Y + + S+MG R+ I + Sbjct: 92 AEVVGLDDLAEQIKAGQMDFDVVIASPDTMRVVGALGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKAGIIHATIGRASFGIEQLQTNLAALVDALQKARPAAAKGIYLRKIAVSSTMGGGARVEIASL 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BEUC1 (50S ribosomal protein L1 OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=rplA PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 4.559e-32 Identity = 63/134 (47.01%), Postives = 94/134 (70.15%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VGGD+LIE++ GG+++FD +A+PD+M KV LG++LGPRGLMPNP+ GTVT ++ +A+EE K GK+++R DK +H+ GKA F E L+ N+ + + + KP +KG Y A + ++MGP I L+ Sbjct: 92 ADEVGGDELIEKVAGGYVDFDAAVATPDLMGKVGRLGRVLGPRGLMPNPRTGTVTMDVAKAVEEIKGGKIDFRVDKHANLHVVVGKASFDETALVENYASVLDEVLRLKPSSSKGRYIVKATLSTTMGPGIPLD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ALHEH (50S ribosomal protein L1 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rplA PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 4.559e-32 Identity = 65/138 (47.10%), Postives = 91/138 (65.94%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD+VG DDL EQ+KGG ++FD ++A+PD M V LG ILGPRGLMPNPK GTVT ++ A++ K G+V YR DK GI+H GK DF + L N A + ++ KP +KGVY K + ++MGP + +++ + Sbjct: 92 ADIVGMDDLAEQVKGGNLDFDVVVAAPDAMGVVGRLGPILGPRGLMPNPKVGTVTPDVAGAVKNAKAGQVRYRTDKGGIIHCAIGKVDFEVEALQQNLQALITDLQKLKPANSKGVYLKKVAVSTTMGPGLAVDLASL 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHESW (50S ribosomal protein L1 OS=Shewanella sp. (strain W3-18-1) GN=rplA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 70/134 (52.24%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG DDL EQIK G M FD +IASPD M V LG+ILGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF+ L N A + +++ KP AKGVY K I ++MG + ++ Sbjct: 92 AELVGMDDLAEQIKAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALISALKKAKPAVAKGVYVKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHEPC (50S ribosomal protein L1 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 70/134 (52.24%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG DDL EQIK G M FD +IASPD M V LG+ILGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF+ L N A + +++ KP AKGVY K I ++MG + ++ Sbjct: 92 AELVGMDDLAEQIKAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALISALKKAKPAVAKGVYVKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHOSK (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rplA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 AD+VG +DL+E I+ G +EFD+ IA+PDMM V LGKILGPR LMPNPK GTVT ++ A+E K G+V+++ +K G++H GK F D L N A V ++ KP GAKG Y K + S+MGP + +++ Sbjct: 92 ADIVGAEDLMETIQSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKSAVEAAKGGEVQFKVEKAGVIHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGTYLKKVSLSSTMGPGVSVDL 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHOS4 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 AD+VG +DL+E I+ G +EFD+ IA+PDMM V LGKILGPR LMPNPK GTVT ++ A+E K G+V+++ +K G++H GK F D L N A V ++ KP GAKG Y K + S+MGP + +++ Sbjct: 92 ADIVGAEDLMETIQSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKSAVEAAKGGEVQFKVEKAGVIHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGTYLKKVSLSSTMGPGVSVDL 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHOS1 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rplA1 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 AD+VG +DL+E I+ G +EFD+ IA+PDMM V LGKILGPR LMPNPK GTVT ++ A+E K G+V+++ +K G++H GK F D L N A V ++ KP GAKG Y K + S+MGP + +++ Sbjct: 92 ADIVGAEDLMETIQSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKSAVEAAKGGEVQFKVEKAGVIHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGTYLKKVSLSSTMGPGVSVDL 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ORITI (50S ribosomal protein L1 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 64/140 (45.71%), Postives = 94/140 (67.14%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD+VG D+IE IK G +++D I +P MMV V+ + +ILGP+GLMPNPK GTVT ++ +++ K G+VE++ DK G +H GK FS D+++ N A V +I +KP AKG Y K Y+ ++MGPS+RL+I + Sbjct: 104 ADIVGSLDIIEAIKSGNIDYDVYITTPAMMVAVSQVARILGPKGLMPNPKLGTVTNDVADVVKKVKSGQVEFKVDKAGNIHAGIGKISFSIDEIIANINAFVSAIIKSKPSEAKGAYLKGIYLSTTMGPSVRLDISSFTE 243 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |