CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NOVAD (50S ribosomal protein L1 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 64/138 (46.38%), Postives = 97/138 (70.29%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD VG +DL+E ++ G +++ ++IA+PDMM V LGK+LGP+GLMPNPK GTVT N+ +A++ K G++E+R +K GI+H GK FS++ L NF A V +I KP GAKG Y + + SSMGP +++++ ++ Sbjct: 93 ADKVGAEDLLEDMQAGNLDYGRVIATPDMMGIVGRLGKVLGPKGLMPNPKLGTVTPNVAEAVKAAKGGQIEFRVEKAGIIHGGIGKLSFSDEALRANFDAFVDAIVKAKPAGAKGKYLRKVGLSSSMGPGLKIDLAQV 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NEIG2 (50S ribosomal protein L1 OS=Neisseria gonorrhoeae (strain NCCP11945) GN=rplA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 70/134 (52.24%), Postives = 90/134 (67.16%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG +DL +IK G + FD +IASPD M V LG ILGPRGLMPNPK GTVT N+ +A++ K G+V+YR DK GIVH G+A F+E DL NF A + +I KP AKG Y K + S+MG +R++ Sbjct: 92 ADVVGFEDLAAEIKAGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKIGTVTPNVAEAVKNAKAGQVQYRTDKAGIVHATIGRASFAEADLKENFDALLDAIVKAKPAAAKGQYLKKVAVSSTMGLGVRVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NEIG1 (50S ribosomal protein L1 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rplA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 70/134 (52.24%), Postives = 90/134 (67.16%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG +DL +IK G + FD +IASPD M V LG ILGPRGLMPNPK GTVT N+ +A++ K G+V+YR DK GIVH G+A F+E DL NF A + +I KP AKG Y K + S+MG +R++ Sbjct: 92 ADVVGFEDLAAEIKAGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKIGTVTPNVAEAVKNAKAGQVQYRTDKAGIVHATIGRASFAEADLKENFDALLDAIVKAKPAAAKGQYLKKVAVSSTMGLGVRVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCVP (50S ribosomal protein L1 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=rplA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 64/131 (48.85%), Postives = 87/131 (66.41%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLIE+I+GGF++FD IA+PD M KV + +ILGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F E L N+ AA+ + KP +KG Y K + ++ GP I Sbjct: 92 ADIVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARILGPRGLMPNPKTGTVTPDVAKAVSDIKGGKINFRVDKQANLHFVIGKASFDESKLAENYGAALDEVLRAKPSSSKGRYLKKVVVSTTTGPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCUA (50S ribosomal protein L1 OS=Mycobacterium ulcerans (strain Agy99) GN=rplA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 63/131 (48.09%), Postives = 89/131 (67.94%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLIE+I+GGF++FD +IA+PD M KV + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F E+ L N+ AA+ + KP +KG Y K + ++ GP I Sbjct: 92 ADIVGSDDLIEKIQGGFLDFDAVIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVDKQANLHFVIGKASFEENKLAENYGAAIDEVLRLKPSASKGRYLKKITVSTTTGPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HAHCH (50S ribosomal protein L1 OS=Hahella chejuensis (strain KCTC 2396) GN=rplA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG DDL E++K G ++FD +IA+PD M V LG+ILGPRGLMPNPK GTVT ++ A+ K G++ YR DK GI+H P G +FS + + N A + ++ KP AKGVY K + S+MGP + ++ Sbjct: 93 ADIVGMDDLAEEVKKGNLDFDVVIATPDAMRVVGQLGQILGPRGLMPNPKVGTVTADVEAAVNNAKAGQIRYRTDKNGIIHAPLGNVEFSAEHIKQNLEALIADLKKIKPSSAKGVYLKKVTLSSTMGPGLLID 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HAEPS (50S ribosomal protein L1 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rplA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 67/134 (50.00%), Postives = 90/134 (67.16%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 ADLVG +DL EQ+K G M FD +IASPD M V LG++LGPRGLMPNPK GTVT N+ +A++ K G++ YR DK GI+H GKADFS + L N A + ++ KP AKG++ K I ++MG + ++ Sbjct: 92 ADLVGMEDLAEQVKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGIIHTTIGKADFSPEQLKENLQALLAALVKAKPTTAKGIFIKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESVV (50S ribosomal protein L1 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 60/134 (44.78%), Postives = 93/134 (69.40%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+ G ++L+ +IK G+++FDK IA+PD+M V +G++LGPRGLMPN K GTVT +I AI+E K G+VE++ DK G++H P GK F + +L N A + ++ KP AKG Y ++ I ++MGP ++++ Sbjct: 92 ADVAGAEELVAKIKEGWLDFDKAIATPDVMALVGQIGRVLGPRGLMPNAKTGTVTFDITTAIKEMKAGRVEFKVDKAGVLHAPLGKVSFGSEKILGNLKALIDTVNRLKPSSAKGTYMQAMAISTTMGPGVKVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESVH (50S ribosomal protein L1 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 60/134 (44.78%), Postives = 93/134 (69.40%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+ G ++L+ +IK G+++FDK IA+PD+M V +G++LGPRGLMPN K GTVT +I AI+E K G+VE++ DK G++H P GK F + +L N A + ++ KP AKG Y ++ I ++MGP ++++ Sbjct: 92 ADVAGAEELVAKIKEGWLDFDKAIATPDVMALVGQIGRVLGPRGLMPNAKTGTVTFDITTAIKEMKAGRVEFKVDKAGVLHAPLGKVSFGSEKILGNLKALIDTVNRLKPSSAKGTYMQAMAISTTMGPGVKVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BACTN (50S ribosomal protein L1 OS=Bacteroides thetaiotaomicron GN=rplA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32 Identity = 63/138 (45.65%), Postives = 95/138 (68.84%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD VG D+ IE+IKGG+ + D +I P +M K+ +LG++LGPRGLMPNPK+GTVT ++ +A++E K+GK++++ DK+GIVH GK FS D + N + ++ KP AKG Y KS Y+ S+M I+++ K + Sbjct: 92 ADYVGLDEYIEKIKGGWTDIDVIITMPSIMGKIGALGRVLGPRGLMPNPKSGTVTMDVAKAVKEVKQGKIDFKVDKSGIVHTSIGKVSFSPDQIRDNAKEFISTLNKLKPTAAKGTYIKSIYLSSTMSAGIKIDPKSV 229 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |