CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NOVAD (50S ribosomal protein L1 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 64/138 (46.38%), Postives = 97/138 (70.29%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG +DL+E ++ G +++ ++IA+PDMM  V  LGK+LGP+GLMPNPK GTVT N+ +A++  K G++E+R +K GI+H   GK  FS++ L  NF A V +I   KP GAKG Y +   + SSMGP +++++ ++
Sbjct:   93 ADKVGAEDLLEDMQAGNLDYGRVIATPDMMGIVGRLGKVLGPKGLMPNPKLGTVTPNVAEAVKAAKGGQIEFRVEKAGIIHGGIGKLSFSDEALRANFDAFVDAIVKAKPAGAKGKYLRKVGLSSSMGPGLKIDLAQV 230          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NEIG2 (50S ribosomal protein L1 OS=Neisseria gonorrhoeae (strain NCCP11945) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 70/134 (52.24%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL  +IK G + FD +IASPD M  V  LG ILGPRGLMPNPK GTVT N+ +A++  K G+V+YR DK GIVH   G+A F+E DL  NF A + +I   KP  AKG Y K   + S+MG  +R++
Sbjct:   92 ADVVGFEDLAAEIKAGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKIGTVTPNVAEAVKNAKAGQVQYRTDKAGIVHATIGRASFAEADLKENFDALLDAIVKAKPAAAKGQYLKKVAVSSTMGLGVRVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NEIG1 (50S ribosomal protein L1 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 70/134 (52.24%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL  +IK G + FD +IASPD M  V  LG ILGPRGLMPNPK GTVT N+ +A++  K G+V+YR DK GIVH   G+A F+E DL  NF A + +I   KP  AKG Y K   + S+MG  +R++
Sbjct:   92 ADVVGFEDLAAEIKAGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKIGTVTPNVAEAVKNAKAGQVQYRTDKAGIVHATIGRASFAEADLKENFDALLDAIVKAKPAAAKGQYLKKVAVSSTMGLGVRVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCVP (50S ribosomal protein L1 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 64/131 (48.85%), Postives = 87/131 (66.41%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLIE+I+GGF++FD  IA+PD M KV  + +ILGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F E  L  N+ AA+  +   KP  +KG Y K   + ++ GP I
Sbjct:   92 ADIVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARILGPRGLMPNPKTGTVTPDVAKAVSDIKGGKINFRVDKQANLHFVIGKASFDESKLAENYGAALDEVLRAKPSSSKGRYLKKVVVSTTTGPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCUA (50S ribosomal protein L1 OS=Mycobacterium ulcerans (strain Agy99) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 63/131 (48.09%), Postives = 89/131 (67.94%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLIE+I+GGF++FD +IA+PD M KV  + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F E+ L  N+ AA+  +   KP  +KG Y K   + ++ GP I
Sbjct:   92 ADIVGSDDLIEKIQGGFLDFDAVIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVDKQANLHFVIGKASFEENKLAENYGAAIDEVLRLKPSASKGRYLKKITVSTTTGPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HAHCH (50S ribosomal protein L1 OS=Hahella chejuensis (strain KCTC 2396) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG DDL E++K G ++FD +IA+PD M  V  LG+ILGPRGLMPNPK GTVT ++  A+   K G++ YR DK GI+H P G  +FS + +  N  A +  ++  KP  AKGVY K   + S+MGP + ++
Sbjct:   93 ADIVGMDDLAEEVKKGNLDFDVVIATPDAMRVVGQLGQILGPRGLMPNPKVGTVTADVEAAVNNAKAGQIRYRTDKNGIIHAPLGNVEFSAEHIKQNLEALIADLKKIKPSSAKGVYLKKVTLSSTMGPGLLID 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HAEPS (50S ribosomal protein L1 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 67/134 (50.00%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            ADLVG +DL EQ+K G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G++ YR DK GI+H   GKADFS + L  N  A + ++   KP  AKG++ K   I ++MG  + ++
Sbjct:   92 ADLVGMEDLAEQVKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGIIHTTIGKADFSPEQLKENLQALLAALVKAKPTTAKGIFIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESVV (50S ribosomal protein L1 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 60/134 (44.78%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+ G ++L+ +IK G+++FDK IA+PD+M  V  +G++LGPRGLMPN K GTVT +I  AI+E K G+VE++ DK G++H P GK  F  + +L N  A + ++   KP  AKG Y ++  I ++MGP ++++
Sbjct:   92 ADVAGAEELVAKIKEGWLDFDKAIATPDVMALVGQIGRVLGPRGLMPNAKTGTVTFDITTAIKEMKAGRVEFKVDKAGVLHAPLGKVSFGSEKILGNLKALIDTVNRLKPSSAKGTYMQAMAISTTMGPGVKVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESVH (50S ribosomal protein L1 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 60/134 (44.78%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+ G ++L+ +IK G+++FDK IA+PD+M  V  +G++LGPRGLMPN K GTVT +I  AI+E K G+VE++ DK G++H P GK  F  + +L N  A + ++   KP  AKG Y ++  I ++MGP ++++
Sbjct:   92 ADVAGAEELVAKIKEGWLDFDKAIATPDVMALVGQIGRVLGPRGLMPNAKTGTVTFDITTAIKEMKAGRVEFKVDKAGVLHAPLGKVSFGSEKILGNLKALIDTVNRLKPSSAKGTYMQAMAISTTMGPGVKVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BACTN (50S ribosomal protein L1 OS=Bacteroides thetaiotaomicron GN=rplA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 63/138 (45.65%), Postives = 95/138 (68.84%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG D+ IE+IKGG+ + D +I  P +M K+ +LG++LGPRGLMPNPK+GTVT ++ +A++E K+GK++++ DK+GIVH   GK  FS D +  N    + ++   KP  AKG Y KS Y+ S+M   I+++ K +
Sbjct:   92 ADYVGLDEYIEKIKGGWTDIDVIITMPSIMGKIGALGRVLGPRGLMPNPKSGTVTMDVAKAVKEVKQGKIDFKVDKSGIVHTSIGKVSFSPDQIRDNAKEFISTLNKLKPTAAKGTYIKSIYLSSTMSAGIKIDPKSV 229          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_NOVAD5.954e-3246.3850S ribosomal protein L1 OS=Novosphingobium aromat... [more]
RL1_NEIG25.954e-3252.2450S ribosomal protein L1 OS=Neisseria gonorrhoeae ... [more]
RL1_NEIG15.954e-3252.2450S ribosomal protein L1 OS=Neisseria gonorrhoeae ... [more]
RL1_MYCVP5.954e-3248.8550S ribosomal protein L1 OS=Mycobacterium vanbaale... [more]
RL1_MYCUA5.954e-3248.0950S ribosomal protein L1 OS=Mycobacterium ulcerans... [more]
RL1_HAHCH5.954e-3247.7650S ribosomal protein L1 OS=Hahella chejuensis (st... [more]
RL1_HAEPS5.954e-3250.0050S ribosomal protein L1 OS=Haemophilus parasuis s... [more]
RL1_DESVV5.954e-3244.7850S ribosomal protein L1 OS=Desulfovibrio vulgaris... [more]
RL1_DESVH5.954e-3244.7850S ribosomal protein L1 OS=Desulfovibrio vulgaris... [more]
RL1_BACTN5.954e-3245.6550S ribosomal protein L1 OS=Bacteroides thetaiotao... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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