CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THISH (50S ribosomal protein L1 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplA PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32 Identity = 67/134 (50.00%), Postives = 88/134 (65.67%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG DDL ++K G M+FD +IA+PD M V LG+ILGPRGLMPNPK GTVTT++ A++ K G+V YR DK GI+H GK F D L N A + ++ KP AKGVY K + ++MGP I ++ Sbjct: 92 ADIVGMDDLAAEVKKGNMDFDVVIATPDAMRVVGQLGQILGPRGLMPNPKVGTVTTDVATAVKNAKGGQVRYRTDKAGIIHCSIGKVGFEPDALKENLNALLADLQKAKPSAAKGVYMKKVTVSTTMGPGIAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRGR (50S ribosomal protein L1 OS=Streptomyces griseus GN=rplA PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32 Identity = 64/134 (47.76%), Postives = 93/134 (69.40%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG D+LI+++ G ++FD ++A+PD+M KV LG++LGPRGLMPNPK GTVT ++ +A+ + K GK+E+R DK +H GK F E L+ N+ AA++ I KP AKG Y K A + ++MGP I L+ Sbjct: 91 ADIVGADELIDEVAKGRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVVKAVNDIKGGKIEFRVDKHSNLHFIIGKVSFDETKLVENYAAALEEILRLKPSAAKGRYIKKATLATTMGPGIPLD 224
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRGG (50S ribosomal protein L1 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rplA PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32 Identity = 64/134 (47.76%), Postives = 93/134 (69.40%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG D+LI+++ G ++FD ++A+PD+M KV LG++LGPRGLMPNPK GTVT ++ +A+ + K GK+E+R DK +H GK F E L+ N+ AA++ I KP AKG Y K A + ++MGP I L+ Sbjct: 91 ADIVGADELIDEVAKGRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVVKAVNDIKGGKIEFRVDKHSNLHFIIGKVSFDETKLVENYAAALEEILRLKPSAAKGRYIKKATLATTMGPGIPLD 224
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRGC (50S ribosomal protein L1 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rplA PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32 Identity = 67/138 (48.55%), Postives = 91/138 (65.94%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD VG DDL+ +I G+++FD +IA+PDMM V LG++LGPR LMPNPK GTVT ++ +A+EE K GK+ YRAD+ GIV GK F D L NF A + I+ KP AKG Y S I ++ GP I++++ + Sbjct: 92 ADFVGEDDLVAKINDGWLDFDVVIATPDMMALVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADRAGIVQAIIGKVSFDADKLAENFKAFNEVIQKAKPATAKGTYVTSLTITTTQGPGIKVDVNSL 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SALAR (50S ribosomal protein L1 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplA PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32 Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG +DL EQIK G M FD +IASPD M V LG++LGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF D L N A + +++ KP AKGVY K I ++MG + ++ Sbjct: 92 AELVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPSQAKGVYIKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHILW (50S ribosomal protein L1 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplA PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32 Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 AD+VG +DL+E ++GG +EFD+ IA+PDMM V LGK+LGPRG+MPNPK GTVT ++ A++ K G VE+R +K GIVH GKA F L N A ++ KP GAKG Y K I S+MGP +++ + Sbjct: 90 ADIVGAEDLVEIVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVEKAGIVHAGIGKASFDAKALEENIRAFADAVIKAKPAGAKGNYVKRVAISSTMGPGVKIEV 224
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NITMU (50S ribosomal protein L1 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rplA PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32 Identity = 68/138 (49.28%), Postives = 93/138 (67.39%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD+VG +DL EQIK G +EFD IASPD M V LG+ILGPRGLMPNPK GTVT ++ A++ K G+V+YRADK GIV G+A F+ D L N +A + ++ +KP +KG+Y + + S+MG +R++ M Sbjct: 92 ADIVGFEDLAEQIKAGNIEFDVAIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPDVAGAVKNAKAGQVQYRADKGGIVQCTIGRASFTVDALTQNMMALIDALNKSKPAASKGIYLRKISVSSTMGIGVRVDQTSM 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_METSB (50S ribosomal protein L1 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplA PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32 Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG +DL+ ++GG + FD+ IA+PDMM V LGK+LGPRGLMPNPK GTVT ++ A++ K G VE+R +K GI+ GKA F +D L N A V ++ KP+GAKG Y + I S+MGP ++++ Sbjct: 92 ADIVGAEDLVATVQGGTIAFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVAAAVKASKGGAVEFRVEKAGIIQGSVGKASFDDDKLAENIAAFVDAVAKAKPQGAKGTYIQRVAISSTMGPGVKVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LEPBL (50S ribosomal protein L1 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=rplA PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32 Identity = 64/140 (45.71%), Postives = 95/140 (67.86%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 A+ VG DLIE++ GG+ +FD +A+PDMM V LG ILG +GLMP PKAGTVTT++ +A+ E K G+VEYR DK G+VH+ GK F L+ N V+++ +KP AKG Y K+ + +MG +++++KE+++ Sbjct: 88 AEFVGDMDLIEKVAGGWTDFDACVATPDMMKDVGKLGPILGRKGLMPKPKAGTVTTDVAKAVNELKSGRVEYRPDKGGVVHLGVGKVSFDNAKLVENIRTVVQTLMRDKPSDAKGDYLKTFSVSPTMGVGVKVDVKELVN 227
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LEPBJ (50S ribosomal protein L1 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=rplA PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32 Identity = 64/140 (45.71%), Postives = 95/140 (67.86%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 A+ VG DLIE++ GG+ +FD +A+PDMM V LG ILG +GLMP PKAGTVTT++ +A+ E K G+VEYR DK G+VH+ GK F L+ N V+++ +KP AKG Y K+ + +MG +++++KE+++ Sbjct: 88 AEFVGDMDLIEKVAGGWTDFDACVATPDMMKDVGKLGPILGRKGLMPKPKAGTVTTDVAKAVNELKSGRVEYRPDKGGVVHLGVGKVSFDNAKLVENIRTVVQTLMRDKPSDAKGDYLKTFSVSPTMGVGVKVDVKELVN 227 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |