CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THISH (50S ribosomal protein L1 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 67/134 (50.00%), Postives = 88/134 (65.67%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG DDL  ++K G M+FD +IA+PD M  V  LG+ILGPRGLMPNPK GTVTT++  A++  K G+V YR DK GI+H   GK  F  D L  N  A +  ++  KP  AKGVY K   + ++MGP I ++
Sbjct:   92 ADIVGMDDLAAEVKKGNMDFDVVIATPDAMRVVGQLGQILGPRGLMPNPKVGTVTTDVATAVKNAKGGQVRYRTDKAGIIHCSIGKVGFEPDALKENLNALLADLQKAKPSAAKGVYMKKVTVSTTMGPGIAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRGR (50S ribosomal protein L1 OS=Streptomyces griseus GN=rplA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 64/134 (47.76%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG D+LI+++  G ++FD ++A+PD+M KV  LG++LGPRGLMPNPK GTVT ++ +A+ + K GK+E+R DK   +H   GK  F E  L+ N+ AA++ I   KP  AKG Y K A + ++MGP I L+
Sbjct:   91 ADIVGADELIDEVAKGRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVVKAVNDIKGGKIEFRVDKHSNLHFIIGKVSFDETKLVENYAAALEEILRLKPSAAKGRYIKKATLATTMGPGIPLD 224          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRGG (50S ribosomal protein L1 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 64/134 (47.76%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG D+LI+++  G ++FD ++A+PD+M KV  LG++LGPRGLMPNPK GTVT ++ +A+ + K GK+E+R DK   +H   GK  F E  L+ N+ AA++ I   KP  AKG Y K A + ++MGP I L+
Sbjct:   91 ADIVGADELIDEVAKGRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVVKAVNDIKGGKIEFRVDKHSNLHFIIGKVSFDETKLVENYAAALEEILRLKPSAAKGRYIKKATLATTMGPGIPLD 224          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRGC (50S ribosomal protein L1 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 67/138 (48.55%), Postives = 91/138 (65.94%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG DDL+ +I  G+++FD +IA+PDMM  V  LG++LGPR LMPNPK GTVT ++ +A+EE K GK+ YRAD+ GIV    GK  F  D L  NF A  + I+  KP  AKG Y  S  I ++ GP I++++  +
Sbjct:   92 ADFVGEDDLVAKINDGWLDFDVVIATPDMMALVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADRAGIVQAIIGKVSFDADKLAENFKAFNEVIQKAKPATAKGTYVTSLTITTTQGPGIKVDVNSL 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SALAR (50S ribosomal protein L1 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL EQIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPSQAKGVYIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHILW (50S ribosomal protein L1 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            AD+VG +DL+E ++GG +EFD+ IA+PDMM  V  LGK+LGPRG+MPNPK GTVT ++  A++  K G VE+R +K GIVH   GKA F    L  N  A   ++   KP GAKG Y K   I S+MGP +++ +
Sbjct:   90 ADIVGAEDLVEIVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVEKAGIVHAGIGKASFDAKALEENIRAFADAVIKAKPAGAKGNYVKRVAISSTMGPGVKIEV 224          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NITMU (50S ribosomal protein L1 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 68/138 (49.28%), Postives = 93/138 (67.39%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD+VG +DL EQIK G +EFD  IASPD M  V  LG+ILGPRGLMPNPK GTVT ++  A++  K G+V+YRADK GIV    G+A F+ D L  N +A + ++  +KP  +KG+Y +   + S+MG  +R++   M
Sbjct:   92 ADIVGFEDLAEQIKAGNIEFDVAIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPDVAGAVKNAKAGQVQYRADKGGIVQCTIGRASFTVDALTQNMMALIDALNKSKPAASKGIYLRKISVSSTMGIGVRVDQTSM 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_METSB (50S ribosomal protein L1 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL+  ++GG + FD+ IA+PDMM  V  LGK+LGPRGLMPNPK GTVT ++  A++  K G VE+R +K GI+    GKA F +D L  N  A V ++   KP+GAKG Y +   I S+MGP ++++
Sbjct:   92 ADIVGAEDLVATVQGGTIAFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVAAAVKASKGGAVEFRVEKAGIIQGSVGKASFDDDKLAENIAAFVDAVAKAKPQGAKGTYIQRVAISSTMGPGVKVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LEPBL (50S ribosomal protein L1 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 64/140 (45.71%), Postives = 95/140 (67.86%), Query Frame = -1
Query:  346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            A+ VG  DLIE++ GG+ +FD  +A+PDMM  V  LG ILG +GLMP PKAGTVTT++ +A+ E K G+VEYR DK G+VH+  GK  F    L+ N    V+++  +KP  AKG Y K+  +  +MG  +++++KE+++
Sbjct:   88 AEFVGDMDLIEKVAGGWTDFDACVATPDMMKDVGKLGPILGRKGLMPKPKAGTVTTDVAKAVNELKSGRVEYRPDKGGVVHLGVGKVSFDNAKLVENIRTVVQTLMRDKPSDAKGDYLKTFSVSPTMGVGVKVDVKELVN 227          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LEPBJ (50S ribosomal protein L1 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 64/140 (45.71%), Postives = 95/140 (67.86%), Query Frame = -1
Query:  346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            A+ VG  DLIE++ GG+ +FD  +A+PDMM  V  LG ILG +GLMP PKAGTVTT++ +A+ E K G+VEYR DK G+VH+  GK  F    L+ N    V+++  +KP  AKG Y K+  +  +MG  +++++KE+++
Sbjct:   88 AEFVGDMDLIEKVAGGWTDFDACVATPDMMKDVGKLGPILGRKGLMPKPKAGTVTTDVAKAVNELKSGRVEYRPDKGGVVHLGVGKVSFDNAKLVENIRTVVQTLMRDKPSDAKGDYLKTFSVSPTMGVGVKVDVKELVN 227          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_THISH7.776e-3250.0050S ribosomal protein L1 OS=Thioalkalivibrio sp. (... [more]
RL1_STRGR7.776e-3247.7650S ribosomal protein L1 OS=Streptomyces griseus G... [more]
RL1_STRGG7.776e-3247.7650S ribosomal protein L1 OS=Streptomyces griseus s... [more]
RL1_STRGC7.776e-3248.5550S ribosomal protein L1 OS=Streptococcus gordonii... [more]
RL1_SALAR7.776e-3251.4950S ribosomal protein L1 OS=Salmonella arizonae (s... [more]
RL1_RHILW7.776e-3249.6350S ribosomal protein L1 OS=Rhizobium leguminosaru... [more]
RL1_NITMU7.776e-3249.2850S ribosomal protein L1 OS=Nitrosospira multiform... [more]
RL1_METSB7.776e-3248.5150S ribosomal protein L1 OS=Methylocella silvestri... [more]
RL1_LEPBL7.776e-3245.7150S ribosomal protein L1 OS=Leptospira borgpeterse... [more]
RL1_LEPBJ7.776e-3245.7150S ribosomal protein L1 OS=Leptospira borgpeterse... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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