CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HELPH (50S ribosomal protein L1 OS=Helicobacter pylori (strain HPAG1) GN=rplA PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.051e-36 Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD+VGGDDL E+IK G ++FD +IA+PDMM V +G+ILGP+GLMPNPK GTVT +I +A+ K G+V +R DK G VH P GKA F E+ + N L VK+I KP AKG Y ++A + +M PS+ L+ +E++D K Sbjct: 93 ADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVSLDAQELMDIK 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HELP2 (50S ribosomal protein L1 OS=Helicobacter pylori (strain P12) GN=rplA PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.051e-36 Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD+VGGDDL E+IK G ++FD +IA+PDMM V +G+ILGP+GLMPNPK GTVT +I +A+ K G+V +R DK G VH P GKA F E+ + N L VK+I KP AKG Y ++A + +M PS+ L+ +E++D K Sbjct: 93 ADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVSLDAQELMDIK 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HELHP (50S ribosomal protein L1 OS=Helicobacter hepaticus GN=rplA PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.051e-36 Identity = 71/142 (50.00%), Postives = 101/142 (71.13%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD+VG DDL E+IK G + FD +IA+PDMM V +G+ILGP+GLMPNPK GTVT ++ +A+ K G+V +R DK GI+H P GKA F+E+ +L N L V++I KP AKG Y +S+ + +M P+I+L+ +E++D K Sbjct: 93 ADVVGADDLAEEIKNGNINFDMVIATPDMMALVGKVGRILGPKGLMPNPKTGTVTIDVAKAVANAKSGQVNFRVDKKGIIHAPIGKASFNEEKILDNMLELVRAINRLKPTSAKGKYIRSSSLSLTMSPAIKLDSQELMDMK 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HELPG (50S ribosomal protein L1 OS=Helicobacter pylori (strain G27) GN=rplA PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.985e-36 Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD+VGGDDL E+IK G ++FD +IA+PDMM V +G+ILGP+GLMPNPK GTVT +I +A+ K G+V +R DK G VH P GKA F E+ + N L VK+I KP AKG Y ++A + +M PS+ L+ +E++D K Sbjct: 93 ADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVSLDAQELMDIK 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BACSK (50S ribosomal protein L1 OS=Bacillus clausii (strain KSM-K16) GN=rplA PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.985e-36 Identity = 70/133 (52.63%), Postives = 94/133 (70.68%), Query Frame = -1 Query: 367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765 AD VG DDLI +I G+ +FD ++A+PDMM +V LG++LGP+GLMPNPK GTVT ++ +A+EE K GKVEYR DK+G +H+P GK F LL NF V+++ KP AKG Y K+ + S+MGP IR+ Sbjct: 92 ADYVGEDDLINKINQGWFDFDVIVATPDMMAQVGRLGRVLGPKGLMPNPKTGTVTFDVTKAVEEIKAGKVEYRVDKSGNIHVPIGKVSFDTPKLLENFQTIVETLHKVKPAAAKGTYVKNIAVASTMGPGIRV 224
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LYSSC (50S ribosomal protein L1 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplA PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 5.204e-36 Identity = 70/134 (52.24%), Postives = 97/134 (72.39%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG + I++I+ G+ +FD ++A+PDMM +V LG++LGP+GLMPNPK GTVT ++ +AIEE K GKVEYRADK GI+H P GK FS L+ NFLA ++ KP AKG Y KS I ++MGP+++++ Sbjct: 92 ADYVGDAEYIQKIQQGWFDFDVIVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAIEEIKAGKVEYRADKAGIIHAPIGKVSFSAAKLVENFLAVFDVVQKAKPAAAKGTYMKSVNITTTMGPAVKID 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ACIBL (50S ribosomal protein L1 OS=Acidobacteria bacterium (strain Ellin345) GN=rplA PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 5.204e-36 Identity = 71/135 (52.59%), Postives = 95/135 (70.37%), Query Frame = -1 Query: 364 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VGG+D++E+I K G+ ++D +I++PDMM V LGK+LGPRGLMPNPK GTVTT++ A+ E K GKVE+R DKTG+VH+P GK F D L+ N + S+ KP AKG Y K Y+ S+MGP I ++ Sbjct: 91 ADFVGGEDMVEKIAKEGWTDYDAVISTPDMMRSVGKLGKVLGPRGLMPNPKTGTVTTDVASAVREVKAGKVEFRTDKTGLVHVPVGKISFPPDKLVDNATTLITSVVKAKPSAAKGKYIKGCYLSSTMGPGISID 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PETMO (50S ribosomal protein L1 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplA PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 6.797e-36 Identity = 72/139 (51.80%), Postives = 99/139 (71.22%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD VG DDLIE+I G+ +FD IA+PD+M K+ LGK+LGPRGLMP+PKAGTVT ++ QA++EFK GKVE R D+TG +HIP GK F +DDL N ++A + KP+ +KG + + A I S+MGP I +++ + Sbjct: 92 ADFVGSDDLIEKINNEGWTDFDVAIATPDIMRKIGRLGKVLGPRGLMPSPKAGTVTDDVAQAVKEFKAGKVEVRNDRTGNIHIPIGKVSFDKDDLKENLISAFDQLTKMKPENSKGKFIRKAVIASTMGPGINIDLSSL 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESHY (50S ribosomal protein L1 OS=Desulfitobacterium hafniense (strain Y51) GN=rplA PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 6.797e-36 Identity = 68/134 (50.75%), Postives = 96/134 (71.64%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG +D+I +I+ G+ FD ++A+PDMM V LG++LGP+GLMPNPK GTVT ++ +A++E K GK+EYRADK GI+H P GK FSE+ L N+ V+++ KP AKG Y +S + S+MGP +R+N Sbjct: 92 ADFVGAEDMIAKIEQGWFGFDVVVATPDMMGMVGKLGRVLGPKGLMPNPKTGTVTFDVAKAVKEIKAGKIEYRADKAGIIHAPIGKVSFSEEQLYQNYKVLVETLVKAKPAAAKGQYIRSVTVSSTMGPGVRIN 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESHD (50S ribosomal protein L1 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplA PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 6.797e-36 Identity = 68/134 (50.75%), Postives = 96/134 (71.64%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG +D+I +I+ G+ FD ++A+PDMM V LG++LGP+GLMPNPK GTVT ++ +A++E K GK+EYRADK GI+H P GK FSE+ L N+ V+++ KP AKG Y +S + S+MGP +R+N Sbjct: 92 ADFVGAEDMIAKIEQGWFGFDVVVATPDMMGMVGKLGRVLGPKGLMPNPKTGTVTFDVAKAVKEIKAGKIEYRADKAGIIHAPIGKVSFSEEQLYQNYKVLVETLVKAKPAAAKGQYIRSVTVSSTMGPGVRIN 225 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |