CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_AQUAE (50S ribosomal protein L1 OS=Aquifex aeolicus GN=rplA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.797e-36
Identity = 74/140 (52.86%), Postives = 103/140 (73.57%), Query Frame = -1
Query:  349 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765
            AD VGGD+LI +I K  + +FD  IA+P+MM KVA LG+ILGPRGLMP+PK GTVTTN+ QAI++ K+G+VE++ DK G VH+P GK  F ++ L+ N  AA+ ++   KP GAKG Y K+  +  +M PS++L+I E+L
Sbjct:   95 ADYVGGDELINKILKEEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLDINEVL 234          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ALKMQ (50S ribosomal protein L1 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.797e-36
Identity = 71/135 (52.59%), Postives = 98/135 (72.59%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG DDL+ +I+G  + +FD ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++ +A++E K GKVEYR DKT I+H+P GKA F E  L  NF   ++++   KP  AKG Y+KS  + S+MGP IR+N
Sbjct:   92 ADYVGSDDLVAKIQGENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDLERAVKEIKAGKVEYRLDKTNIIHVPIGKASFEEAQLAENFKTLLEAVAKAKPAAAKGQYFKSVSVTSTMGPGIRVN 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SPHWW (50S ribosomal protein L1 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.877e-36
Identity = 71/138 (51.45%), Postives = 100/138 (72.46%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            A++VG +DL+E I+GG ++FD+ IA+PDMM  V  LGKILGP+GLMPNPK GTVT N+ +A++  K G+VE+R +K GI+H   GKA F  +DL  NF A V +I   KP GAKG Y K A + S+MGP +++++ ++
Sbjct:   92 AEVVGAEDLLETIQGGTVDFDRCIATPDMMGLVGRLGKILGPKGLMPNPKLGTVTMNVAEAVKAAKGGQVEFRVEKAGIIHSGIGKASFPAEDLRANFDAFVDAIVKAKPTGAKGKYLKKAAVSSTMGPGVKIDVADV 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GRABC (50S ribosomal protein L1 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.877e-36
Identity = 72/138 (52.17%), Postives = 96/138 (69.57%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD+VG +DL E ++ G +EFD+ IA+PDMM  V  LGKILGPRGLMPNPK GTVT ++  A+   K G++E+RA+K GI+H   GKA F  D L+ N  A V +I+  KP GAKG Y + A + SSMGP +RL++  +
Sbjct:   91 ADVVGAEDLAELVQNGTIEFDRCIATPDMMALVGRLGKILGPRGLMPNPKLGTVTMDVKGAVTAAKSGQIEFRAEKAGIIHAGIGKASFDADKLVENIRALVDAIQKAKPTGAKGTYLQKAALSSSMGPGMRLDVSSL 228          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BREBN (50S ribosomal protein L1 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.877e-36
Identity = 67/136 (49.26%), Postives = 96/136 (70.59%), Query Frame = -1
Query:  358 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 765
            AD VG  D+I +I+GG+ +FD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT ++ +A+ E K GK+EYR DK G +H P GKA F  D L+ N  A  +++   KP  AKGVY ++  + S+MGP +R+ +K
Sbjct:   92 ADFVGDADMIAKIQGGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKIEYRVDKAGNIHAPIGKASFDADKLVENLAALTEALNRAKPAAAKGVYMRNVTLSSTMGPGVRVAVK 227          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ALKOO (50S ribosomal protein L1 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.877e-36
Identity = 71/141 (50.35%), Postives = 101/141 (71.63%), Query Frame = -1
Query:  346 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VGGD+L+ +I+G  + EFD ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++ +A+ E K GKVEYR DKT I+H+P GKA F E  L+ NF   + ++   KP  AKG Y KS  + S+MGP I++N  ++++
Sbjct:   92 ADYVGGDELVAKIQGENWFEFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDLTKAVNEIKAGKVEYRLDKTNIIHVPLGKASFEETQLVENFRTLLDAVVKAKPAAAKGQYLKSITVTSTMGPGIKINPLKVME 232          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ZYMMO (50S ribosomal protein L1 OS=Zymomonas mobilis GN=rplA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.159e-35
Identity = 71/138 (51.45%), Postives = 99/138 (71.74%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            A++VG +DL+E I+GG ++FD+ IA+PDMM  V  LGKILGP+G+MPNPK GTVT N+  A++  K G+VEYR D+TGI+H   GKA FS +D+  NF A + ++   KP GAKG Y K   I S+MGP + ++I ++
Sbjct:   92 AEVVGAEDLMEAIQGGSIDFDRCIATPDMMGVVGRLGKILGPKGMMPNPKLGTVTMNVADAVKAAKGGQVEYRVDRTGIIHSGIGKASFSAEDIRANFDALIDALLKAKPAGAKGRYVKKVAISSTMGPGVSIDIADL 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HELMI (50S ribosomal protein L1 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.159e-35
Identity = 69/134 (51.49%), Postives = 96/134 (71.64%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG +DL+E+I+GG+++FD  +A+PD+M  V  LG++LGP+GLMPNPK GTVT ++ +AI+E K GK+EYR DKTGI+H P GKA F    LL N+   + ++   KP  AKG Y KS  + S+M P +R+N
Sbjct:   92 ADAVGAEDLVEKIQGGWLDFDVAVATPDVMGLVGKLGRLLGPKGLMPNPKTGTVTFDVARAIQEIKAGKIEYRVDKTGIIHAPIGKASFDVQKLLENYQTLLDTLIKAKPAAAKGQYIKSITLSSTMSPGVRVN 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DEIDV (50S ribosomal protein L1 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rplA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.159e-35
Identity = 71/136 (52.21%), Postives = 99/136 (72.79%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            AD+VG D+LIE+I GGFMEFD ++A+PDMM  V   L ++LGPRGL+PNPK+GTV  ++   +   K G++E+R DKTG+VH P GKA F   +L  N+ A + ++EA KP  AKGV+ +SAY+ ++MGPSI L +
Sbjct:   92 ADVVGSDELIERIAGGFMEFDAVVATPDMMAAVGQKLARLLGPRGLLPNPKSGTVGPDVTGMVRGLKAGRIEFRNDKTGVVHAPIGKASFDPSNLSANYGALISALEAAKPGTAKGVFLRSAYMTTTMGPSIPLTL 227          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNWW (50S ribosomal protein L1 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.514e-35
Identity = 69/134 (51.49%), Postives = 94/134 (70.15%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VGG+DL E+I+GG+ +FD  +A+PDMM  V  +GKILGPRGLMPNPKAGTVT +I + I+E K G++EYR DK+ IVH P G+  F  D L  N  A  +++   +P  AKG Y +S  +CS+M P +++N
Sbjct:   91 ADYVGGEDLAEKIQGGWFDFDVAVATPDMMAVVGKMGKILGPRGLMPNPKAGTVTFDIERTIKELKAGRIEYRVDKSAIVHAPIGRISFEVDKLQENLNAFAEALLKARPAAAKGQYMRSVTVCSTMSPGVKIN 224          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_AQUAE6.797e-3652.8650S ribosomal protein L1 OS=Aquifex aeolicus GN=rp... [more]
RL1_ALKMQ6.797e-3652.5950S ribosomal protein L1 OS=Alkaliphilus metallire... [more]
RL1_SPHWW8.877e-3651.4550S ribosomal protein L1 OS=Sphingomonas wittichii... [more]
RL1_GRABC8.877e-3652.1750S ribosomal protein L1 OS=Granulibacter bethesde... [more]
RL1_BREBN8.877e-3649.2650S ribosomal protein L1 OS=Brevibacillus brevis (... [more]
RL1_ALKOO8.877e-3650.3550S ribosomal protein L1 OS=Alkaliphilus oremlandi... [more]
RL1_ZYMMO1.159e-3551.4550S ribosomal protein L1 OS=Zymomonas mobilis GN=r... [more]
RL1_HELMI1.159e-3551.4950S ribosomal protein L1 OS=Heliobacterium modesti... [more]
RL1_DEIDV1.159e-3552.2150S ribosomal protein L1 OS=Deinococcus deserti (s... [more]
RL1_SYNWW1.514e-3551.4950S ribosomal protein L1 OS=Syntrophomonas wolfei ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
back to top