CN188821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMAL1_BOVIN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Bos taurus GN=SMARCAL1 PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 7.629e-24 Identity = 61/160 (38.12%), Postives = 98/160 (61.25%), Query Frame = -1 Query: 275 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVS-SSQIRSSPAKQKTLDSFLKRCNNVDDSE 751 +LDAI K +K+V IRIDG T A R+ + F ++ VLS+ A +GLT ++A V+F EL W PG L+QAEDR HRIGQ+SSV+++YL+A T DD +W +++ K++ LG+ N E++ ++ S +KQ+ + + ++ D ++ Sbjct: 734 VLDAITKELERKRVQHIRIDGSTSSADRETSASSFSCPRALRG-VLSITAANMGLTFSSADLVVFGELFWNPGVLMQAEDRVHRIGQLSSVSIHYLVARGTADDYLWPLIQEKIKVLGEAGLSETNFSEMTEATDYFSKDSKQQKIYNLFQKSFEEDGND 892
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_CRYNE (Putative DNA helicase INO80 OS=Cryptococcus neoformans GN=INO80 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.140e-19 Identity = 54/158 (34.18%), Postives = 89/158 (56.33%), Query Frame = -1 Query: 311 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHEN-----------SLEVSSSQIRSSPAKQKTLDS 751 M+D I + + ++ +R+DG +P A R+ +VT +Q D+ LS +AGG+G+ LTAA TVIF + W P QA DRAHR+GQ V VY L+A T+++ + + R K +++ V+ G ++ SL + ++ S AK+K ++ Sbjct: 1481 MMDLIEEYLIFRQYKYLRLDGSSPIAERRDMVTSWQTNPDIFVFCLSTRAGGLGINLTAADTVIFYDHDWNPSSDAQAMDRAHRVGQTKQVTVYRLVARGTIEERILQMARGK-KDIQDVVVGTKSVSDVAKPSEIVSLFMDDEELAESVAKRKQAEA 1637
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_HUMAN (Putative DNA helicase INO80 complex homolog 1 OS=Homo sapiens GN=INO80 PE=1 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 4.332e-19 Identity = 55/168 (32.74%), Postives = 90/168 (53.57%), Query Frame = -1 Query: 248 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQKLKYRK 751 M+D + + + +K +R+DG + + R+ +V +FQ ++D+ +LS +AGG+G+ LTAA TVIF + W P QA DRAHR+GQ V VY L+ T+++ + + K E V+ G + K K + S L +DD E ++KL+ R+ Sbjct: 1129 MIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG---------GNFKPDTLKPKEVVSLL-----LDDEELEKKLRLRQ 1282
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_MOUSE (Putative DNA helicase INO80 complex homolog 1 OS=Mus musculus GN=Ino80 PE=2 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 5.658e-19 Identity = 55/168 (32.74%), Postives = 90/168 (53.57%), Query Frame = -1 Query: 248 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQKLKYRK 751 M+D + + + +K +R+DG + + R+ +V +FQ ++D+ +LS +AGG+G+ LTAA TVIF + W P QA DRAHR+GQ V VY L+ T+++ + + K E V+ G + K K + S L +DD E ++KL+ R+ Sbjct: 1132 MIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG---------GNFKPDTLKPKEVVSLL-----LDDEELEKKLRLRQ 1285
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: FFT2_SCHPO (Uncharacterized ATP-dependent helicase fft2 OS=Schizosaccharomyces pombe GN=fft2 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.808e-18 Identity = 44/114 (38.60%), Postives = 72/114 (63.16%), Query Frame = -1 Query: 410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751 MLD + ++ K+ +R+DG T RQ ++ +F +++DV +LS KAGG G+ L A+ VI + S+ P D +QAEDRAHR+GQV V V L+ ++T+++ + + +KL Sbjct: 952 MLDILEQVLDTLKISYVRLDGSTQVEVRQDIIDQFHKEEDVTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEEYIQKLANTKL 1065
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_USTMA (Putative DNA helicase INO80 OS=Ustilago maydis GN=INO80 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.667e-18 Identity = 44/115 (38.26%), Postives = 73/115 (63.48%), Query Frame = -1 Query: 407 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE 751 M+D + + + ++ +R+DG + + R+ +VT++Q K ++ +LS +AGG+G+ LTAA TVIF + W P + QA DRAHR+GQ V VY L+ T+D+ + + R+K E Sbjct: 1607 MIDLMEEYLIYRQYKYLRLDGASKISDRRDMVTDWQTKPELFIFLLSTRAGGLGINLTAADTVIFYDHDWNPSNDSQAMDRAHRLGQTKQVTVYRLITKGTIDERIVRLARNKKE 1721
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: MOT1_YEAST (TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae GN=MOT1 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.789e-18 Identity = 50/130 (38.46%), Postives = 73/130 (56.15%), Query Frame = -1 Query: 371 MLDAIHKLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS 751 MLD + KK V +R+DG P RQ +V +F E + +L+ K GG+GL LT A TVIF E W P + +QA DRAHRIGQ VNVY ++ T+++ + + + K+ N+ + +NS Sbjct: 1658 MLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKM-NIASTVVNQQNS 1786
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_DROME (Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 6.255e-18 Identity = 56/168 (33.33%), Postives = 88/168 (52.38%), Query Frame = -1 Query: 248 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQKLKYRK 751 M+D + + +K +R+DG + ++R+ +V +FQ + D+ +LS +AGG+G+ LTAA TVIF + W P QA DRAHR+GQ V VY L+ T+++ + R K E V+ G + K K + S L +DD E + +KYR+ Sbjct: 1184 MIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISG---------GNFKPDTLKPKEVVSLL-----LDDEEIE--MKYRQ 1335
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: BTAF1_HUMAN (TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.393e-17 Identity = 48/132 (36.36%), Postives = 71/132 (53.79%), Query Frame = -1 Query: 365 MLDAIHKLFLKK---KVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLE 751 MLD + LK V +R+DG PP R ++V+ F + +L+ GG+GL LT A TV+F E W P +QA DRAHRIGQ VNVY L+ T+++ + + + K+ V+ +SL+ Sbjct: 1656 MLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQ 1787
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_ASHGO (Putative DNA helicase INO80 OS=Ashbya gossypii GN=INO80 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.820e-17 Identity = 51/147 (34.69%), Postives = 82/147 (55.78%), Query Frame = -1 Query: 311 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDS 751 M+D I + ++ IR+DG + R+ LV ++Q K D+ +LS +AGG+G+ LT+A TVIF + W P QA DRAHR+GQ V VY LL T+++ + D + K V++G + + +++ A KTL++ Sbjct: 1268 MMDLIEEYLTYRQYKHIRLDGSSKLEDRRDLVHDWQTKSDIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLLIKGTIEERMRDRAKQKEHVQQVVMEG-----KTKENNVQTITANGKTLEN 1409 The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 138
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bpback to top |