CN188821

Overview
NameCN188821
Unique NameCN188821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_DEBHA (Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 35/103 (33.98%), Postives = 55/103 (53.40%), Query Frame = -1
Query:  443 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 751
            +LD + +         +R+DG T    RQ L  +F     +   +LS ++GG+G+ LT A TVIF +  W P    Q +DR HRIGQ   V++Y  ++  T++
Sbjct: 1360 VLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDSKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQSRDVHIYRFVSEYTIE 1462          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 43/135 (31.85%), Postives = 69/135 (51.11%), Query Frame = -1
Query:  368 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE------NLGQVLDGHENSL 751
            +LD +    + +     R+DG TP   R+  +  F   +  K   +LS +AGG+G+ L +A  VI  +  W P   +QA DRAHRIGQ   V V+ L+ ++TV++ + +    KL         G+++D   N L
Sbjct:  518 LLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKL 652          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ERC6L_MOUSE (DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  431 MLDAIHKLFLKKKVHCIRIDGG-TPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 751
            +L+ I +L   K    +RIDG  T    R+  +  FQ+  +    +L+ + GGVGLTLTAA+ V+  + SW P    QA DR +RIGQ  +V VY L+   TV++ ++
Sbjct:  491 ILNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIY 598          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD2_HUMAN (Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 46/155 (29.68%), Postives = 80/155 (51.61%), Query Frame = -1
Query:  302 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS----LEVSSSQIRSSPAKQKTLDSFLK 751
            MLD + +    K     R+DG      R+  +  F  +  +    +LS +AGG+G+ L +A TV+  +  W P + +QA+ RAHRIGQ   VN+Y L+   TV++ + +  + K+     V+   + +    LE +S +  S+P  ++ L + LK
Sbjct:  819 MLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFNKEELTAILK 973          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: YG42_SCHPO (Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe GN=SPBC23E6.02 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = -1
Query:  359 FLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVS 727
            F ++ +  +   GG   A R   +  F+   +V+  ++S+KAG VGL LT A+ VI  +  W P    QA DRAHRIGQ   VN+  ++ N+T+++ V  +   K E +   L G +   E+S
Sbjct:  903 FRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLALQDRKRELIDSAL-GEKGLREIS 1024          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_ASHGO (Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 36/103 (34.95%), Postives = 54/103 (52.43%), Query Frame = -1
Query:  401 IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENL 703
            +R+DG T    RQ L   F     +   +LS ++GG+G+ LT A TVIF +  W P    Q +DR HRIGQ   V++Y   +  T++  +      K  L+N+
Sbjct: 1261 MRLDGATKIEDRQILTERFNTDPRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFASEHTIESNILKKANQKRQLDNI 1363          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RAD5_NEUCR (DNA repair protein rad-5 OS=Neurospora crassa GN=rad-5 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = -1
Query:  443 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 748
            L  I     + K+  +R+DG     +R A++TEFQ  +     +LS+KAGGVGL LT+A  V   +  W+     QA DR HR+GQ   V VY  +   +V+
Sbjct: 1081 LSLISSALTRHKISFLRLDGSMSQKARAAVLTEFQSTNKFCVLLLSLKAGGVGLNLTSAKRVYMMDPWWSFAVEAQAIDRVHRMGQEDEVRVYRFIVKQSVE 1182          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ISW1_YEAST (ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae GN=ISW1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 42/141 (29.79%), Postives = 71/141 (50.35%), Query Frame = -1
Query:  332 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPA 751
            +LD +      +     RIDG T    R   + ++   D  K   +L+ +AGG+G+ LT+A  V+  +  W P   +QA DRAHRIGQ   V V+ L+ +++V++ + +    KL     V+  +  SL+   ++  S  A
Sbjct:  530 LLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLKKKENKADSKDA 670          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ERC6L_DANRE (DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  431 MLDAIHKLFLKKKVHCIRIDGG-TPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 751
            MLD + ++   +    +R+DG  T  A R+  ++ FQ        +L+ + GGVG+TLT A+ V+  + SW P    QA DRA+RIGQ  +V +Y L+   TV++ ++
Sbjct:  503 MLDIMERVLRNRNFRLLRLDGTVTQLAEREKRISLFQTDKRYTIFLLTTQVGGVGITLTGANRVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIY 610          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RAD5_ASHGO (DNA repair protein RAD5 OS=Ashbya gossypii GN=RAD5 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = -1
Query:  377 RIDGGTPPASRQALVTEFQEKDDVKAAVL--SMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHE 700
            + DG      R  ++ +F EK  VK  VL  S+KAGGVGL LT AS     +  W+PG   QA DR HRIGQ ++V +Y  +  +++++ +   ++ K  +LG+ +D  E
Sbjct:  961 KFDGRLDLKERSNVLAKFTEKSLVKMKVLLLSLKAGGVGLNLTCASHAFIMDPWWSPGMEDQAMDRIHRIGQSNTVKIYRFIVENSIEEKMLR-IQEKKRSLGEFVDADE 1069          
The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SWR1_DEBHA3.927e-1233.98Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=... [more]
SMCA1_MOUSE5.129e-1231.85Probable global transcription activator SNF2L1 OS=... [more]
ERC6L_MOUSE5.129e-1237.96DNA excision repair protein ERCC-6-like OS=Mus mus... [more]
CHD2_HUMAN5.129e-1229.68Chromodomain-helicase-DNA-binding protein 2 OS=Hom... [more]
YG42_SCHPO6.699e-1234.15Uncharacterized ATP-dependent helicase C23E6.02 OS... [more]
SWR1_ASHGO6.699e-1234.95Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1[more]
RAD5_NEUCR6.699e-1237.25DNA repair protein rad-5 OS=Neurospora crassa GN=r... [more]
ISW1_YEAST6.699e-1229.79ISWI chromatin-remodeling complex ATPase ISW1 OS=S... [more]
ERC6L_DANRE6.699e-1235.19DNA excision repair protein ERCC-6-like OS=Danio r... [more]
RAD5_ASHGO8.749e-1237.27DNA repair protein RAD5 OS=Ashbya gossypii GN=RAD5... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bp
CTTTTTTTATAAACGATGTTATTGTATTCATCTACAAAACAGAGGAATAT
CCCTATAAAGCCTCATGTCAGTATTACACTTACACTGCCTGTCATATAGA
GATTCTTGTCTCTCACTAATTTGGAGTAGTAATCAATGTTCTCTGAGGCT
CCGCATATCAAAAGGGCACATTTTCATGTGTCTGTGTACATGTGATGCAT
AGACCGACGCATCTCAAAATATACATTTTATAGTGTGTGGATTAGAGCTT
TCGGTATTTTAGCTTCTGCTGATGTTCAGAGTCATCCACATTGTTGCAAC
GCTTCAGGAAGGAGTCGAGTGTTTTCTGCTTTGCAGGGCTGCTTCTTATT
TGACTGCTTGAAACTTCCAAACTATTTTCATGACCATCAAGCACCTGTCC
CAAATTTTCCAACTTGCTCCGAACAACATCCCATACTATGTCATCAACTG
TGTCATTTGCCAGTAGGTAGTATACATTTACGGAAGATACCTGGCCGATC
CTGTGAGCACGATCTTCAGCTTGAATGAGATCACCTGGAGTCCATGACAA
CTCCGCGAAAATAACAGTGCTTGCAGCCGTTAATGTTAAACCAACACCTC
CGGCTTTCATAGATAGCACTGCTGCCTTGACATCATCTTTCTCCTGAAAT
TCAGTAACCAAAGCTTGTCTTGAAGCAGGAGGGGTACCCCCATCAATCCG
AATGCAATGCACTTTCTTCTTAAGAAAAAGTTTATGTATTGCATCAAGCA
TGGGCTG
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