CN188821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_DEBHA (Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12 Identity = 35/103 (33.98%), Postives = 55/103 (53.40%), Query Frame = -1 Query: 443 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 751 +LD + + +R+DG T RQ L +F + +LS ++GG+G+ LT A TVIF + W P Q +DR HRIGQ V++Y ++ T++ Sbjct: 1360 VLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDSKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQSRDVHIYRFVSEYTIE 1462
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12 Identity = 43/135 (31.85%), Postives = 69/135 (51.11%), Query Frame = -1 Query: 368 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE------NLGQVLDGHENSL 751 +LD + + + R+DG TP R+ + F + K +LS +AGG+G+ L +A VI + W P +QA DRAHRIGQ V V+ L+ ++TV++ + + KL G+++D N L Sbjct: 518 LLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKL 652
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ERC6L_MOUSE (DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12 Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = -1 Query: 431 MLDAIHKLFLKKKVHCIRIDGG-TPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 751 +L+ I +L K +RIDG T R+ + FQ+ + +L+ + GGVGLTLTAA+ V+ + SW P QA DR +RIGQ +V VY L+ TV++ ++ Sbjct: 491 ILNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIY 598
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD2_HUMAN (Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12 Identity = 46/155 (29.68%), Postives = 80/155 (51.61%), Query Frame = -1 Query: 302 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS----LEVSSSQIRSSPAKQKTLDSFLK 751 MLD + + K R+DG R+ + F + + +LS +AGG+G+ L +A TV+ + W P + +QA+ RAHRIGQ VN+Y L+ TV++ + + + K+ V+ + + LE +S + S+P ++ L + LK Sbjct: 819 MLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFNKEELTAILK 973
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: YG42_SCHPO (Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe GN=SPBC23E6.02 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12 Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = -1 Query: 359 FLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVS 727 F ++ + + GG A R + F+ +V+ ++S+KAG VGL LT A+ VI + W P QA DRAHRIGQ VN+ ++ N+T+++ V + K E + L G + E+S Sbjct: 903 FRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLALQDRKRELIDSAL-GEKGLREIS 1024
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_ASHGO (Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12 Identity = 36/103 (34.95%), Postives = 54/103 (52.43%), Query Frame = -1 Query: 401 IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENL 703 +R+DG T RQ L F + +LS ++GG+G+ LT A TVIF + W P Q +DR HRIGQ V++Y + T++ + K L+N+ Sbjct: 1261 MRLDGATKIEDRQILTERFNTDPRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFASEHTIESNILKKANQKRQLDNI 1363
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RAD5_NEUCR (DNA repair protein rad-5 OS=Neurospora crassa GN=rad-5 PE=3 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12 Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = -1 Query: 443 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVD 748 L I + K+ +R+DG +R A++TEFQ + +LS+KAGGVGL LT+A V + W+ QA DR HR+GQ V VY + +V+ Sbjct: 1081 LSLISSALTRHKISFLRLDGSMSQKARAAVLTEFQSTNKFCVLLLSLKAGGVGLNLTSAKRVYMMDPWWSFAVEAQAIDRVHRMGQEDEVRVYRFIVKQSVE 1182
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ISW1_YEAST (ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae GN=ISW1 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12 Identity = 42/141 (29.79%), Postives = 71/141 (50.35%), Query Frame = -1 Query: 332 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPA 751 +LD + + RIDG T R + ++ D K +L+ +AGG+G+ LT+A V+ + W P +QA DRAHRIGQ V V+ L+ +++V++ + + KL V+ + SL+ ++ S A Sbjct: 530 LLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLKKKENKADSKDA 670
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ERC6L_DANRE (DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12 Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = -1 Query: 431 MLDAIHKLFLKKKVHCIRIDGG-TPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 751 MLD + ++ + +R+DG T A R+ ++ FQ +L+ + GGVG+TLT A+ V+ + SW P QA DRA+RIGQ +V +Y L+ TV++ ++ Sbjct: 503 MLDIMERVLRNRNFRLLRLDGTVTQLAEREKRISLFQTDKRYTIFLLTTQVGGVGITLTGANRVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIY 610
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RAD5_ASHGO (DNA repair protein RAD5 OS=Ashbya gossypii GN=RAD5 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12 Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = -1 Query: 377 RIDGGTPPASRQALVTEFQEKDDVKAAVL--SMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHE 700 + DG R ++ +F EK VK VL S+KAGGVGL LT AS + W+PG QA DR HRIGQ ++V +Y + +++++ + ++ K +LG+ +D E Sbjct: 961 KFDGRLDLKERSNVLAKFTEKSLVKMKVLLLSLKAGGVGLNLTCASHAFIMDPWWSPGMEDQAMDRIHRIGQSNTVKIYRFIVENSIEEKMLR-IQEKKRSLGEFVDADE 1069 The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 138
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bpback to top |