CN188821

Overview
NameCN188821
Unique NameCN188821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD8_XENTR (Chromodomain-helicase-DNA-binding protein 8 OS=Xenopus tropicalis GN=chd8 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 43/131 (32.82%), Postives = 69/131 (52.67%), Query Frame = -1
Query:  368 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL---ENLGQVLDGHENSL 748
            LD +    ++++    RIDG      RQA +  F   D D    +L  +AGG+G+ LTAA T I  +  W P + +QA+ R HRIGQ  +V +Y L+  ++ +  ++D    KL   + + Q + G +N L
Sbjct: 1106 LDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDNHL 1236          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMCA2_MOUSE (Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = -1
Query:  410 IRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 703
            +R+DG T    R AL+ +F E        +LS +AGG+GL L AA TV+  +  W P   +QA+DRAHRIGQ + V V  L   ++V++ +    + KL
Sbjct: 1099 LRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKL 1197          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMCA2_HUMAN (Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = -1
Query:  410 IRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 703
            +R+DG T    R AL+ +F E        +LS +AGG+GL L AA TV+  +  W P   +QA+DRAHRIGQ + V V  L   ++V++ +    + KL
Sbjct: 1094 LRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKL 1192          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD8_DANRE (Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = -1
Query:  299 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKR 748
            LD +    + K+    RIDG      RQA +  F + D D    +L  +AGG+G+ LTAA T +  +  W P + +QA+ R HRIGQ  +V VY L+  ++ +  + D    KL     VL     + E S  Q       +K ++  L++
Sbjct: 1199 LDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSMSGNKESSIQQF-----SKKEIEDLLRK 1344          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHDM_DROME (Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = -1
Query:  410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751
            MLD +      ++    RIDGG     RQ  +  F      +   +LS +AGG+G+ L  A TVI  +  W P + IQA  RAHRIGQ + V +Y  +  ++V++ V  V + K+
Sbjct: 1080 MLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKM 1194          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD8_RAT (Chromodomain-helicase-DNA-binding protein 8 OS=Rattus norvegicus GN=Chd8 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = -1
Query:  410 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 748
            LD +    ++++    RIDG      RQA +  F + D D    +L  +AGG+G+ LTAA T I  +  W P + +QA+ R HRIGQ  +V VY L+  ++ +  ++D    KL
Sbjct: 1162 LDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKL 1275          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD8_MOUSE (Chromodomain-helicase-DNA-binding protein 8 OS=Mus musculus GN=Chd8 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = -1
Query:  410 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 748
            LD +    ++++    RIDG      RQA +  F + D D    +L  +AGG+G+ LTAA T I  +  W P + +QA+ R HRIGQ  +V VY L+  ++ +  ++D    KL
Sbjct: 1164 LDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKL 1277          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD8_HUMAN (Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = -1
Query:  410 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 748
            LD +    ++++    RIDG      RQA +  F + D D    +L  +AGG+G+ LTAA T I  +  W P + +QA+ R HRIGQ  +V VY L+  ++ +  ++D    KL
Sbjct: 1162 LDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKL 1275          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD1_MOUSE (Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 44/155 (28.39%), Postives = 79/155 (50.97%), Query Frame = -1
Query:  302 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS----LEVSSSQIRSSPAKQKTLDSFLK 751
            MLD + +    ++    R+DG      R+  +  F  E  +    +LS +AGG+G+ L +A TV+  +  W P + +QA+ RAHRIGQ   VN+Y L+   +V++ + +  + K+     V+   + +    L   S+   S+P  ++ L + LK
Sbjct:  814 MLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILK 968          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD1_HUMAN (Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 44/155 (28.39%), Postives = 79/155 (50.97%), Query Frame = -1
Query:  302 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS----LEVSSSQIRSSPAKQKTLDSFLK 751
            MLD + +    ++    R+DG      R+  +  F  E  +    +LS +AGG+G+ L +A TV+  +  W P + +QA+ RAHRIGQ   VN+Y L+   +V++ + +  + K+     V+   + +    L   S+   S+P  ++ L + LK
Sbjct:  816 MLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILK 970          
The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
CHD8_XENTR8.749e-1232.82Chromodomain-helicase-DNA-binding protein 8 OS=Xen... [more]
SMCA2_MOUSE1.492e-1139.39Probable global transcription activator SNF2L2 OS=... [more]
SMCA2_HUMAN1.492e-1139.39Probable global transcription activator SNF2L2 OS=... [more]
CHD8_DANRE1.492e-1131.13Chromodomain-helicase-DNA-binding protein 8 OS=Dan... [more]
CHDM_DROME1.949e-1134.78Chromodomain-helicase-DNA-binding protein Mi-2 hom... [more]
CHD8_RAT1.949e-1135.09Chromodomain-helicase-DNA-binding protein 8 OS=Rat... [more]
CHD8_MOUSE1.949e-1135.09Chromodomain-helicase-DNA-binding protein 8 OS=Mus... [more]
CHD8_HUMAN1.949e-1135.09Chromodomain-helicase-DNA-binding protein 8 OS=Hom... [more]
CHD1_MOUSE1.949e-1128.39Chromodomain-helicase-DNA-binding protein 1 OS=Mus... [more]
CHD1_HUMAN1.949e-1128.39Chromodomain-helicase-DNA-binding protein 1 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bp
CTTTTTTTATAAACGATGTTATTGTATTCATCTACAAAACAGAGGAATAT
CCCTATAAAGCCTCATGTCAGTATTACACTTACACTGCCTGTCATATAGA
GATTCTTGTCTCTCACTAATTTGGAGTAGTAATCAATGTTCTCTGAGGCT
CCGCATATCAAAAGGGCACATTTTCATGTGTCTGTGTACATGTGATGCAT
AGACCGACGCATCTCAAAATATACATTTTATAGTGTGTGGATTAGAGCTT
TCGGTATTTTAGCTTCTGCTGATGTTCAGAGTCATCCACATTGTTGCAAC
GCTTCAGGAAGGAGTCGAGTGTTTTCTGCTTTGCAGGGCTGCTTCTTATT
TGACTGCTTGAAACTTCCAAACTATTTTCATGACCATCAAGCACCTGTCC
CAAATTTTCCAACTTGCTCCGAACAACATCCCATACTATGTCATCAACTG
TGTCATTTGCCAGTAGGTAGTATACATTTACGGAAGATACCTGGCCGATC
CTGTGAGCACGATCTTCAGCTTGAATGAGATCACCTGGAGTCCATGACAA
CTCCGCGAAAATAACAGTGCTTGCAGCCGTTAATGTTAAACCAACACCTC
CGGCTTTCATAGATAGCACTGCTGCCTTGACATCATCTTTCTCCTGAAAT
TCAGTAACCAAAGCTTGTCTTGAAGCAGGAGGGGTACCCCCATCAATCCG
AATGCAATGCACTTTCTTCTTAAGAAAAAGTTTATGTATTGCATCAAGCA
TGGGCTG
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