CN188821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD8_XENTR (Chromodomain-helicase-DNA-binding protein 8 OS=Xenopus tropicalis GN=chd8 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12 Identity = 43/131 (32.82%), Postives = 69/131 (52.67%), Query Frame = -1 Query: 368 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL---ENLGQVLDGHENSL 748 LD + ++++ RIDG RQA + F D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ +V +Y L+ ++ + ++D KL + + Q + G +N L Sbjct: 1106 LDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDNHL 1236
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMCA2_MOUSE (Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11 Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = -1 Query: 410 IRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 703 +R+DG T R AL+ +F E +LS +AGG+GL L AA TV+ + W P +QA+DRAHRIGQ + V V L ++V++ + + KL Sbjct: 1099 LRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKL 1197
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMCA2_HUMAN (Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11 Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = -1 Query: 410 IRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 703 +R+DG T R AL+ +F E +LS +AGG+GL L AA TV+ + W P +QA+DRAHRIGQ + V V L ++V++ + + KL Sbjct: 1094 LRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKL 1192
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD8_DANRE (Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8 PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11 Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = -1 Query: 299 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKR 748 LD + + K+ RIDG RQA + F + D D +L +AGG+G+ LTAA T + + W P + +QA+ R HRIGQ +V VY L+ ++ + + D KL VL + E S Q +K ++ L++ Sbjct: 1199 LDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSMSGNKESSIQQF-----SKKEIEDLLRK 1344
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHDM_DROME (Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11 Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = -1 Query: 410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751 MLD + ++ RIDGG RQ + F + +LS +AGG+G+ L A TVI + W P + IQA RAHRIGQ + V +Y + ++V++ V V + K+ Sbjct: 1080 MLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKM 1194
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD8_RAT (Chromodomain-helicase-DNA-binding protein 8 OS=Rattus norvegicus GN=Chd8 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11 Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = -1 Query: 410 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 748 LD + ++++ RIDG RQA + F + D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ +V VY L+ ++ + ++D KL Sbjct: 1162 LDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKL 1275
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD8_MOUSE (Chromodomain-helicase-DNA-binding protein 8 OS=Mus musculus GN=Chd8 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11 Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = -1 Query: 410 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 748 LD + ++++ RIDG RQA + F + D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ +V VY L+ ++ + ++D KL Sbjct: 1164 LDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKL 1277
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD8_HUMAN (Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8 PE=1 SV=4) HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11 Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = -1 Query: 410 LDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKD-DVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 748 LD + ++++ RIDG RQA + F + D D +L +AGG+G+ LTAA T I + W P + +QA+ R HRIGQ +V VY L+ ++ + ++D KL Sbjct: 1162 LDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKL 1275
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD1_MOUSE (Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11 Identity = 44/155 (28.39%), Postives = 79/155 (50.97%), Query Frame = -1 Query: 302 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS----LEVSSSQIRSSPAKQKTLDSFLK 751 MLD + + ++ R+DG R+ + F E + +LS +AGG+G+ L +A TV+ + W P + +QA+ RAHRIGQ VN+Y L+ +V++ + + + K+ V+ + + L S+ S+P ++ L + LK Sbjct: 814 MLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILK 968
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD1_HUMAN (Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11 Identity = 44/155 (28.39%), Postives = 79/155 (50.97%), Query Frame = -1 Query: 302 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQ-EKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS----LEVSSSQIRSSPAKQKTLDSFLK 751 MLD + + ++ R+DG R+ + F E + +LS +AGG+G+ L +A TV+ + W P + +QA+ RAHRIGQ VN+Y L+ +V++ + + + K+ V+ + + L S+ S+P ++ L + LK Sbjct: 816 MLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILK 970 The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 138
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bpback to top |