CN188821

Overview
NameCN188821
Unique NameCN188821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: FFT1_SCHPO (Uncharacterized ATP-dependent helicase fft1 OS=Schizosaccharomyces pombe GN=fft1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.377e-17
Identity = 47/138 (34.06%), Postives = 79/138 (57.25%), Query Frame = -1
Query:  341 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLE-NLGQVLDGHENSLEVSSSQIRS 751
            +LD +  +     +  +R+DG TP  +RQ L+ +F   ++ K  +LS K+GG G+ LT A+ VI  + S+ P D +QAEDRAHR+GQ   V+VY L+  +T+++ +  +  +KL        D  +   E+S   ++S
Sbjct:  792 VLDILEYVLNTLDLEFLRLDGSTPVETRQQLIDDFHTNENYKVFLLSTKSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRLITKNTIEENIRRLANTKLTLESSLTTDSEKIQKEISGELMKS 929          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_CANGA (Putative DNA helicase INO80 OS=Candida glabrata GN=INO80 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.054e-17
Identity = 51/157 (32.48%), Postives = 85/157 (54.14%), Query Frame = -1
Query:  287 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAK--QKTLDSFLKRCNNV 751
            M+D + +    ++ + IR+DG +    R+ LV ++Q   ++   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY LL   T+++ + D  + K +    V++G      + ++  R    +   K+L S  +  NN+
Sbjct: 1323 MMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVHDWQTNPEIFIFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTKDTNIQTTHTRPEHEQLTPKSLSSEPEATNNL 1479          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.916e-17
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = -1
Query:  440 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDD 751
            ML+ +      +K   +R+DG +    R+ +V +FQ + D+   +LS +AGG+G+ LTAA TVIF E  W P   +QA DRAHR+GQ   V VY L+  +TV++
Sbjct: 1234 MLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEE 1337          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_DEBHA (Putative DNA helicase INO80 OS=Debaryomyces hansenii GN=INO80 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.032e-17
Identity = 58/171 (33.92%), Postives = 87/171 (50.88%), Query Frame = -1
Query:  248 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTL---DSFLKRCNNVDDSEHQQKLKYRK 751
            M+D + +    ++   IR+DG +    R+ LV ++Q K ++   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY LL   T+++ + D  + K +    V++G         S  +        L   DS     N  DDSE +Q L+  K
Sbjct: 1170 MMDLMEEYLTYRQHKYIRLDGSSKLDDRRDLVHDWQTKPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLTRGTIEERMRDRAKQKEQVQQVVMEGKSAIANKEESGNKKKDVAFLLLGNDDSSAAALN--DDSEEKQNLQDSK 1338          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_LODEL (Putative DNA helicase ino80 OS=Lodderomyces elongisporus GN=INO80 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.180e-16
Identity = 46/128 (35.94%), Postives = 75/128 (58.59%), Query Frame = -1
Query:  368 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSL 751
            M+D + +    K+   IR+DG +    R+ LV ++Q K ++   +LS +AGG+G+ LTAA TV+F +  W P    QA DRAHR+GQ   V VY LL  +T+++ + D  + K +    V++G   ++
Sbjct: 1339 MMDLMEEYLTFKQHKYIRLDGSSKLDDRRDLVHDWQTKPEIFVFLLSTRAGGLGINLTAADTVVFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLTRNTIEERMRDRAKQKEQVQQVVMEGKATTI 1466          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_YEAST (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae GN=INO80 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.012e-16
Identity = 45/135 (33.33%), Postives = 76/135 (56.30%), Query Frame = -1
Query:  347 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQI 751
            M+D + +    ++ + IR+DG +    R+ LV ++Q   ++   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY LL   T+++ + D  + K +    V++G      + + ++
Sbjct: 1327 MMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQEKNIKTIEV 1461          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_YEAS7 (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae (strain YJM789) GN=INO80 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.012e-16
Identity = 45/135 (33.33%), Postives = 76/135 (56.30%), Query Frame = -1
Query:  347 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQI 751
            M+D + +    ++ + IR+DG +    R+ LV ++Q   ++   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY LL   T+++ + D  + K +    V++G      + + ++
Sbjct: 1333 MMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQEKNIKTIEV 1467          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: MOT1_SCHPO (Probable helicase mot1 OS=Schizosaccharomyces pombe GN=mot1 PE=1 SV=4)

HSP 1 Score: 85.8853 bits (211), Expect = 2.628e-16
Identity = 49/130 (37.69%), Postives = 70/130 (53.85%), Query Frame = -1
Query:  371 MLDAIHKLFLKKK---VHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS 751
            MLD + K  L+     V  +R+DG   P  RQ  VT+F     +   +L+   GG+GL LT A TVIF E  W P   +QA DRAHRIGQ   VNVY L+    +++ +  + R K+ N+   +   +N+
Sbjct: 1748 MLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMGLQRFKM-NVASTVVNQQNA 1876          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_KLULA (Putative DNA helicase INO80 OS=Kluyveromyces lactis GN=INO80 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.628e-16
Identity = 48/121 (39.67%), Postives = 73/121 (60.33%), Query Frame = -1
Query:  389 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVL 751
            M+D + +    ++   IR+DG +    R+ LV ++Q K D+   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY LL   T+++ + D  + K E++ QV+
Sbjct: 1347 MMDLMEEYLTYRQYTHIRLDGSSKLDDRRDLVHDWQTKPDIFIFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLIRGTIEERMRDRAKQK-EHVQQVV 1466          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: INO80_VANPO (Putative DNA helicase INO80 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=INO80 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16
Identity = 47/121 (38.84%), Postives = 73/121 (60.33%), Query Frame = -1
Query:  389 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVL 751
            M+D + +    ++   IR+DG +    R+ LV ++Q + D+   +LS +AGG+G+ LTAA TVIF +  W P    QA DRAHR+GQ   V VY LL   T+++ + D  + K E++ QV+
Sbjct: 1405 MMDLMEEYLTYRQYSHIRLDGSSKLEDRRDLVHDWQTRPDIFIFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLIRGTIEERMRDRAKQK-EHVQQVV 1524          
The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
FFT1_SCHPO2.377e-1734.06Uncharacterized ATP-dependent helicase fft1 OS=Sch... [more]
INO80_CANGA4.054e-1732.48Putative DNA helicase INO80 OS=Candida glabrata GN... [more]
INO80_ARATH6.916e-1741.35DNA helicase INO80 complex homolog 1 OS=Arabidopsi... [more]
INO80_DEBHA9.032e-1733.92Putative DNA helicase INO80 OS=Debaryomyces hansen... [more]
INO80_LODEL1.180e-1635.94Putative DNA helicase ino80 OS=Lodderomyces elongi... [more]
INO80_YEAST2.012e-1633.33Putative DNA helicase INO80 OS=Saccharomyces cerev... [more]
INO80_YEAS72.012e-1633.33Putative DNA helicase INO80 OS=Saccharomyces cerev... [more]
MOT1_SCHPO2.628e-1637.69Probable helicase mot1 OS=Schizosaccharomyces pomb... [more]
INO80_KLULA2.628e-1639.67Putative DNA helicase INO80 OS=Kluyveromyces lacti... [more]
INO80_VANPO3.432e-1638.84Putative DNA helicase INO80 OS=Vanderwaltozyma pol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006N06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bp
CTTTTTTTATAAACGATGTTATTGTATTCATCTACAAAACAGAGGAATAT
CCCTATAAAGCCTCATGTCAGTATTACACTTACACTGCCTGTCATATAGA
GATTCTTGTCTCTCACTAATTTGGAGTAGTAATCAATGTTCTCTGAGGCT
CCGCATATCAAAAGGGCACATTTTCATGTGTCTGTGTACATGTGATGCAT
AGACCGACGCATCTCAAAATATACATTTTATAGTGTGTGGATTAGAGCTT
TCGGTATTTTAGCTTCTGCTGATGTTCAGAGTCATCCACATTGTTGCAAC
GCTTCAGGAAGGAGTCGAGTGTTTTCTGCTTTGCAGGGCTGCTTCTTATT
TGACTGCTTGAAACTTCCAAACTATTTTCATGACCATCAAGCACCTGTCC
CAAATTTTCCAACTTGCTCCGAACAACATCCCATACTATGTCATCAACTG
TGTCATTTGCCAGTAGGTAGTATACATTTACGGAAGATACCTGGCCGATC
CTGTGAGCACGATCTTCAGCTTGAATGAGATCACCTGGAGTCCATGACAA
CTCCGCGAAAATAACAGTGCTTGCAGCCGTTAATGTTAAACCAACACCTC
CGGCTTTCATAGATAGCACTGCTGCCTTGACATCATCTTTCTCCTGAAAT
TCAGTAACCAAAGCTTGTCTTGAAGCAGGAGGGGTACCCCCATCAATCCG
AATGCAATGCACTTTCTTCTTAAGAAAAAGTTTATGTATTGCATCAAGCA
TGGGCTG
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