CN188821

Overview
NameCN188821
Unique NameCN188821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: BRM_DROME (ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 47/146 (32.19%), Postives = 79/146 (54.11%), Query Frame = -1
Query:  269 IRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQ 703
            +R+DG T    R  L+ +F  K  DV   +LS +AGG+GL L  A TV+  +  W P   +QA+DRAHRIGQ + V V  L+  ++V++ +    R KL    +V+       + + S+      +Q+ L + L + +N ++ E++
Sbjct: 1142 LRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSE------RQQFLQTILHQDDNEEEEENE 1281          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RAD26_MOUSE (Putative DNA repair and recombination protein RAD26-like OS=Mus musculus GN=Rad26l PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 43/127 (33.86%), Postives = 70/127 (55.12%), Query Frame = -1
Query:  371 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS 751
            +LD + +  +   +   R+DG T    R  +V EF    DV   ++S  AGG+GL    A+ VI  + +W P + +QA DRA+RIGQ   V V  L++  TV++I++ + +   + L  V+ G EN+
Sbjct:  534 LLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMY-LRQVYKQQLHCVVVGSENA 659          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD1_YEAST (Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae GN=CHD1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = -1
Query:  410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751
            MLD +      K ++  R+DG  P A R+  +  F   D      +LS +AGG+G+ L  A TV+  +  W P   +QA  RAHRIGQ + V VY L++ DTV++ V +  R K+
Sbjct:  723 MLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 837          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_YARLI (Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 40/122 (32.79%), Postives = 62/122 (50.82%), Query Frame = -1
Query:  386 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLD 751
            +LD + +      +  +R+DG T    RQ L   F     +   +LS ++GG+G+ LT A TVIF +  W P    Q +DR HRIGQ   V++Y  ++  T++  +      K  N  Q+LD
Sbjct: 1497 VLDVLEQFLNIHGLRYMRLDGATKIEQRQLLTERFNTDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPSMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNI-----LKKANQKQILD 1613          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ERC6L_BOVIN (DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = -1
Query:  431 MLDAIHKLFLKKKVHCIRIDGG-TPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 751
            +L+ I +L   +    +RIDG  T    R+  ++ FQ+  D    +L+ + GGVGLTLTAAS V+  + SW P    QA DR +RIGQ  +V VY L+   TV++ ++
Sbjct:  490 ILNIIERLLKNRHFKILRIDGTITHLVEREKRISLFQQNKDYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIY 597          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: Y018_MYCGE (Uncharacterized ATP-dependent helicase MG018 OS=Mycoplasma genitalium GN=MG018 PE=3 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 40/121 (33.06%), Postives = 65/121 (53.72%), Query Frame = -1
Query:  389 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVL 751
            ++D   +    +K+  +  DG     +R  ++ +F    +    + S+KAGGVG+ LTAA  VI  ++ W      QA DRAHRIGQ  +V VY ++A +T+++ V  V   K E + + L
Sbjct:  891 VIDCFKQTLKNQKIDHLVFDGRKTVKNRNTIIQKFNSAKEPCVMLASLKAGGVGINLTAAEVVIHFDVWWNSAVENQATDRAHRIGQSKTVQVYRIIAKNTIEERVCQVQNQKQELVKKTL 1011          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: TTF2_DROME (Transcription termination factor 2 OS=Drosophila melanogaster GN=lds PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 43/137 (31.39%), Postives = 76/137 (55.47%), Query Frame = -1
Query:  344 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVL-SMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIR 751
            +LD +     K  V  + ++G  P  +RQ +V EF ++++ K  +L S+ AGGVGL L  A+ ++  +L W P    QA+DR +R+GQ  +V +Y  +  DTV+  +  +   KL+    VL G + S +++   ++
Sbjct:  920 VLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGLQDKKLDLADGVLTGAKVSSKLTIDDLK 1056          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: HELLS_MOUSE (Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = -1
Query:  401 RIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD--VVRSKLENL 700
            R+DG    + R+  +  F    DV   ++S +AGG+G+ LTAA TVI  +  W P   +QA+DR HRIGQ   V VY L+  +T+D  + +    + KLE L
Sbjct:  627 RLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKL 728          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_GIBZE (Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 49/162 (30.25%), Postives = 78/162 (48.15%), Query Frame = -1
Query:  245 IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENL----GQVLDGHENSL---EVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQKLKYRKL 703
            +R+DG T    RQ L   F     +   +LS ++GG+G+ LT A TVIF +  W P    Q +DR HRIGQ   V++Y L++  T++  +      K  L+++    G+    + N L   +V S ++ S        D+ L R     D+ + Q+   R L
Sbjct: 1415 LRLDGATKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQEGEFTTDYFNKLSVRDVLSEKLDSKSEGLDAADAALDRVLGGPDTNNDQRRVGRAL 1576          
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RAD26_HUMAN (Putative DNA repair and recombination protein RAD26-like OS=Homo sapiens GN=RAD26L PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = -1
Query:  371 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS 751
            +LD + +  +   +   R+DG T    R  +V EF    DV   ++S  AGG+GL    A+ V+  + +W P + +QA DRA+RIGQ   V V  L++  TV++I++ + +   + L  V+ G EN+
Sbjct:  547 LLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMY-LRQIYKQQLHCVVVGSENA 672          
The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
BRM_DROME2.720e-1332.19ATP-dependent helicase brm OS=Drosophila melanogas... [more]
RAD26_MOUSE3.552e-1333.86Putative DNA repair and recombination protein RAD2... [more]
CHD1_YEAST3.552e-1337.39Chromo domain-containing protein 1 OS=Saccharomyce... [more]
SWR1_YARLI4.639e-1332.79Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 ... [more]
ERC6L_BOVIN4.639e-1338.89DNA excision repair protein ERCC-6-like OS=Bos tau... [more]
Y018_MYCGE6.059e-1333.06Uncharacterized ATP-dependent helicase MG018 OS=My... [more]
TTF2_DROME6.059e-1331.39Transcription termination factor 2 OS=Drosophila m... [more]
HELLS_MOUSE6.059e-1339.22Lymphocyte-specific helicase OS=Mus musculus GN=He... [more]
SWR1_GIBZE7.913e-1330.25Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1[more]
RAD26_HUMAN7.913e-1333.07Putative DNA repair and recombination protein RAD2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006N06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bp
CTTTTTTTATAAACGATGTTATTGTATTCATCTACAAAACAGAGGAATAT
CCCTATAAAGCCTCATGTCAGTATTACACTTACACTGCCTGTCATATAGA
GATTCTTGTCTCTCACTAATTTGGAGTAGTAATCAATGTTCTCTGAGGCT
CCGCATATCAAAAGGGCACATTTTCATGTGTCTGTGTACATGTGATGCAT
AGACCGACGCATCTCAAAATATACATTTTATAGTGTGTGGATTAGAGCTT
TCGGTATTTTAGCTTCTGCTGATGTTCAGAGTCATCCACATTGTTGCAAC
GCTTCAGGAAGGAGTCGAGTGTTTTCTGCTTTGCAGGGCTGCTTCTTATT
TGACTGCTTGAAACTTCCAAACTATTTTCATGACCATCAAGCACCTGTCC
CAAATTTTCCAACTTGCTCCGAACAACATCCCATACTATGTCATCAACTG
TGTCATTTGCCAGTAGGTAGTATACATTTACGGAAGATACCTGGCCGATC
CTGTGAGCACGATCTTCAGCTTGAATGAGATCACCTGGAGTCCATGACAA
CTCCGCGAAAATAACAGTGCTTGCAGCCGTTAATGTTAAACCAACACCTC
CGGCTTTCATAGATAGCACTGCTGCCTTGACATCATCTTTCTCCTGAAAT
TCAGTAACCAAAGCTTGTCTTGAAGCAGGAGGGGTACCCCCATCAATCCG
AATGCAATGCACTTTCTTCTTAAGAAAAAGTTTATGTATTGCATCAAGCA
TGGGCTG
back to top