CN188821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: BRM_DROME (ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13 Identity = 47/146 (32.19%), Postives = 79/146 (54.11%), Query Frame = -1 Query: 269 IRIDGGTPPASRQALVTEFQEK-DDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQ 703 +R+DG T R L+ +F K DV +LS +AGG+GL L A TV+ + W P +QA+DRAHRIGQ + V V L+ ++V++ + R KL +V+ + + S+ +Q+ L + L + +N ++ E++ Sbjct: 1142 LRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSE------RQQFLQTILHQDDNEEEEENE 1281
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RAD26_MOUSE (Putative DNA repair and recombination protein RAD26-like OS=Mus musculus GN=Rad26l PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13 Identity = 43/127 (33.86%), Postives = 70/127 (55.12%), Query Frame = -1 Query: 371 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS 751 +LD + + + + R+DG T R +V EF DV ++S AGG+GL A+ VI + +W P + +QA DRA+RIGQ V V L++ TV++I++ + + + L V+ G EN+ Sbjct: 534 LLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMY-LRQVYKQQLHCVVVGSENA 659
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: CHD1_YEAST (Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae GN=CHD1 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13 Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = -1 Query: 410 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAA-VLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKL 751 MLD + K ++ R+DG P A R+ + F D +LS +AGG+G+ L A TV+ + W P +QA RAHRIGQ + V VY L++ DTV++ V + R K+ Sbjct: 723 MLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 837
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_YARLI (Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13 Identity = 40/122 (32.79%), Postives = 62/122 (50.82%), Query Frame = -1 Query: 386 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLD 751 +LD + + + +R+DG T RQ L F + +LS ++GG+G+ LT A TVIF + W P Q +DR HRIGQ V++Y ++ T++ + K N Q+LD Sbjct: 1497 VLDVLEQFLNIHGLRYMRLDGATKIEQRQLLTERFNTDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPSMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNI-----LKKANQKQILD 1613
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ERC6L_BOVIN (DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13 Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = -1 Query: 431 MLDAIHKLFLKKKVHCIRIDGG-TPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVW 751 +L+ I +L + +RIDG T R+ ++ FQ+ D +L+ + GGVGLTLTAAS V+ + SW P QA DR +RIGQ +V VY L+ TV++ ++ Sbjct: 490 ILNIIERLLKNRHFKILRIDGTITHLVEREKRISLFQQNKDYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIY 597
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: Y018_MYCGE (Uncharacterized ATP-dependent helicase MG018 OS=Mycoplasma genitalium GN=MG018 PE=3 SV=3) HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13 Identity = 40/121 (33.06%), Postives = 65/121 (53.72%), Query Frame = -1 Query: 389 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVL 751 ++D + +K+ + DG +R ++ +F + + S+KAGGVG+ LTAA VI ++ W QA DRAHRIGQ +V VY ++A +T+++ V V K E + + L Sbjct: 891 VIDCFKQTLKNQKIDHLVFDGRKTVKNRNTIIQKFNSAKEPCVMLASLKAGGVGINLTAAEVVIHFDVWWNSAVENQATDRAHRIGQSKTVQVYRIIAKNTIEERVCQVQNQKQELVKKTL 1011
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: TTF2_DROME (Transcription termination factor 2 OS=Drosophila melanogaster GN=lds PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13 Identity = 43/137 (31.39%), Postives = 76/137 (55.47%), Query Frame = -1 Query: 344 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVL-SMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIR 751 +LD + K V + ++G P +RQ +V EF ++++ K +L S+ AGGVGL L A+ ++ +L W P QA+DR +R+GQ +V +Y + DTV+ + + KL+ VL G + S +++ ++ Sbjct: 920 VLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGLQDKKLDLADGVLTGAKVSSKLTIDDLK 1056
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: HELLS_MOUSE (Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13 Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = -1 Query: 401 RIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWD--VVRSKLENL 700 R+DG + R+ + F DV ++S +AGG+G+ LTAA TVI + W P +QA+DR HRIGQ V VY L+ +T+D + + + KLE L Sbjct: 627 RLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKL 728
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SWR1_GIBZE (Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13 Identity = 49/162 (30.25%), Postives = 78/162 (48.15%), Query Frame = -1 Query: 245 IRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSK--LENL----GQVLDGHENSL---EVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQKLKYRKL 703 +R+DG T RQ L F + +LS ++GG+G+ LT A TVIF + W P Q +DR HRIGQ V++Y L++ T++ + K L+++ G+ + N L +V S ++ S D+ L R D+ + Q+ R L Sbjct: 1415 LRLDGATKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQEGEFTTDYFNKLSVRDVLSEKLDSKSEGLDAADAALDRVLGGPDTNNDQRRVGRAL 1576
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: RAD26_HUMAN (Putative DNA repair and recombination protein RAD26-like OS=Homo sapiens GN=RAD26L PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13 Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = -1 Query: 371 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENS 751 +LD + + + + R+DG T R +V EF DV ++S AGG+GL A+ V+ + +W P + +QA DRA+RIGQ V V L++ TV++I++ + + + L V+ G EN+ Sbjct: 547 LLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMY-LRQIYKQQLHCVVVGSENA 672 The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 138
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bpback to top |