CN188815

Overview
NameCN188815
Unique NameCN188815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:62..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  433 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 681
            S D   R +VG LAW     +L   FS  G ++++K++ DR++GRSRGFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  183 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  433 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 681
            S D   R +VG LAW     +L   FS  G ++++K++ DR++GRSRGFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  189 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = -1
Query:  433 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 663
            + ++GGL+  T + SL +AFS++  + E++++ ++ TGRSRG+GFV F  E S   AI  MNGQ L+G NI+VN A+
Sbjct:   32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = -1
Query:  436 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 669
            E + FVGGL + T + +L + FS++G I E  ++ DRET RSRGFGF+TF + +    A+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  436 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 678
            AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +DA   MNG++LDG+ I V +A
Sbjct:    4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  436 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 678
            AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +DA   MNG++LDG+ I V +A
Sbjct:    4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = -1
Query:  436 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 678
            AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +D    MNG++LDG+ I V +A
Sbjct:    4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  436 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 663
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  436 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 663
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CN188815 vs. ExPASy Swiss-Prot
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  436 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 663
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
The following BLAST results are available for this feature:
BLAST of CN188815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
ROC1_NICSY8.230e-1442.1729 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL8.230e-1442.1730 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RT19_ARATH1.075e-1345.4540S ribosomal protein S19, mitochondrial OS=Arabid... [more]
RBM3_HUMAN1.075e-1347.44Putative RNA-binding protein 3 OS=Homo sapiens GN=... [more]
HNRPG_PANTR9.099e-1344.44Heterogeneous nuclear ribonucleoprotein G OS=Pan t... [more]
HNRPG_HUMAN9.099e-1344.44Heterogeneous nuclear ribonucleoprotein G OS=Homo ... [more]
HNRPG_RAT2.648e-1243.21Heterogeneous nuclear ribonucleoprotein G OS=Rattu... [more]
RBM38_CHICK5.898e-1248.68RNA-binding protein 38 OS=Gallus gallus GN=RBM38 P... [more]
RBM24_XENTR5.898e-1248.68RNA-binding protein 24 OS=Xenopus tropicalis GN=rb... [more]
RBM24_CHICK5.898e-1248.68RNA-binding protein 24 OS=Gallus gallus GN=RBM24 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188815 ID=CN188815; Name=CN188815; organism=Citrus sinensis; type=EST; length=702bp
TTTTTTTTTTTTTTTTTGAAAAGAACTGTAATTCATTTCCTTTTTTTTTT
CAACAATTAACCAAACAGGGAGAACGAAACAACACAGGATAACAGGAACC
GATCAAAACGACACATCATAACCCAAGGAAAATATCAAAACACGGAACGG
TAACCTTCAACTCCTAATTTATCCTACAAAACCCTAGTTCCTCCAGCTAC
CGCCATCAAAAGCACCGCTCCTTGAGTATCGGGAACCACCATCACCGCCA
TATCCACCGTCACGGCTGTAACCACCTTCACGGCGGCCACCATATCCACC
GCCGCCACCTCCGTATCCGCGGCTCCCACCGTATCCACCGCCACCACCAC
TTTCACGGCGTCCACCACCTCCATATCCACCACCGCCACGGCTTCCGTAA
CCGCCACCGGCACCGCCACCGCTTCCACGGGACTGGGCCTCGTTGACTGT
TATGTTACGGCCGTCCAAATTCTGGCCGTTCATGCCTTCGATTGCGTCCC
TCATCGACTTCTCATCGCGGAAGGTAACGAATCCAAATCCTCTGGATCTT
CCAGTCTCGCGATCGTTAATAATCTTCGATTCAAGGATATCGCCGTAAGC
ACTGAAGGCCTCATGGAGAGAGCTGTCAGTGGTGGCCCAGGCCAGGCCGC
CTACGAAGCACCGAAACTCGACATCGGCTGAAGCCCTTAGGAGAAAACTT
GA
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