CN188809

Overview
NameCN188809
Unique NameCN188809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9120 contig Csv1_Contig9120:117..928. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188809 vs. ExPASy Swiss-Prot
Match: YKT6_MOUSE (Synaptobrevin homolog YKT6 OS=Mus musculus GN=Ykt6 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.540e-39
Identity = 93/202 (46.04%), Postives = 127/202 (62.87%), Query Frame = -1
Query:  199 MKITALLVL-KCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 795
            MK+ +L VL K +P     V+L  A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ +EY  H Y R+  L  +   D  YP R +F+LL +VLDE+ K      W       +Q +  L++ L+KYQ+P EAD + K+Q ELDETKIILH T++S+L RGEKLD LV KS  L   S+ FYK A+K N CC I+
Sbjct:    1 MKLYSLSVLYKGDPKA---VLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSGKGSRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIQ-YTGLDDHLSKYQNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCAIM 198          
BLAST of CN188809 vs. ExPASy Swiss-Prot
Match: YKT6_HUMAN (Synaptobrevin homolog YKT6 OS=Homo sapiens GN=YKT6 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.234e-38
Identity = 85/183 (46.45%), Postives = 117/183 (63.93%), Query Frame = -1
Query:  199 VVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 741
            V+L  A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ ++Y  H Y RN  L  +   D+ YP R +F+LL +VLDE+ K      W       +  +P L+  L++YQ+P EAD + K+Q ELDETKIILH T++S+L RGEKLD LV KS  L   S+ FYK A+K N CC I+
Sbjct:   17 VLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSSKGTRASVKEQDYLCHVYVRNDSLAGVVIADNEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIH-YPALDGHLSRYQNPREADPMTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCAIM 198          
BLAST of CN188809 vs. ExPASy Swiss-Prot
Match: YKT6_RAT (Synaptobrevin homolog YKT6 OS=Rattus norvegicus GN=Ykt6 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.328e-37
Identity = 84/183 (45.90%), Postives = 115/183 (62.84%), Query Frame = -1
Query:  199 VVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 741
            V+L  A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ +EY  H Y R+  L  +   D  YP R +F+LL +VLDE+ K      W       +  +  L+  L++YQ+P EAD + K+Q ELDETKIILH T++S+L RGEKLD LV KS  L   S+ FYK A+K N CC I+
Sbjct:   17 VLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIH-YTALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCAIM 198          
BLAST of CN188809 vs. ExPASy Swiss-Prot
Match: YKT6B_XENLA (Synaptobrevin homolog YKT6-B OS=Xenopus laevis GN=ykt6-B PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.040e-37
Identity = 89/202 (44.06%), Postives = 126/202 (62.38%), Query Frame = -1
Query:  199 MKITALLVLKCNPDGSDPV-VLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 795
            MK+ +L VL     G + V +L +A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ +EY  H Y RN  L  +   D+ YP R  F+LL +VL+E+        W +     +Q +  L+  L+KYQ+P +AD + K+Q ELDETKI+LH T++S+L RGEKLD LV KS  L   S+ FYK A+K N CC I+
Sbjct:    1 MKLYSLSVLY---KGENKVHLLKSAYDVSSFSFFQRSSVQEFMTFTSQLIVERSDKGSRSSVKEQEYLCHVYVRNDSLAGVVIADNEYPPRVCFTLLEKVLEEFSTQVDRIDWPSGSPATIQ-YNALDSYLSKYQNPRDADPMSKVQAELDETKIVLHNTMESLLQRGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCDIM 198          
BLAST of CN188809 vs. ExPASy Swiss-Prot
Match: YKT6A_XENLA (Synaptobrevin homolog YKT6-A OS=Xenopus laevis GN=ykt6-A PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.040e-37
Identity = 89/202 (44.06%), Postives = 126/202 (62.38%), Query Frame = -1
Query:  199 MKITALLVLKCNPDGSDPV-VLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 795
            MK+ +L VL     G + V +L +A DVS F +FQRSS++EF+ F ++ + +R+  G R SV+ +EY  H Y RN  L  +   D+ YP R  F+LL +VL+E+        W +     +Q +  L+  L+KYQ+P +AD + K+Q ELDETKIILH T++S+L RGEKLD LV KS  L   S+ FYK A+K N CC I+
Sbjct:    1 MKLYSLSVLY---KGENKVHLLKSAYDVSSFSFFQRSSIQEFMAFTSQLIVERSDKGSRSSVKEQEYLCHVYVRNDSLAGVVIADNEYPPRVCFTLLEKVLEEFSTQVDRIDWPSGSPATIQ-YNALDSYLSKYQNPRDADPMSKVQAELDETKIILHNTMESLLQRGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCDIM 198          
BLAST of CN188809 vs. ExPASy Swiss-Prot
Match: YKT6_XENTR (Synaptobrevin homolog YKT6 OS=Xenopus tropicalis GN=ykt6 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.971e-37
Identity = 89/202 (44.06%), Postives = 126/202 (62.38%), Query Frame = -1
Query:  199 MKITALLVLKCNPDGSDPV-VLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 795
            MK+ +L VL     G + V +L +A DVS F +FQRSS++EF+ F ++ + +R+  G R SV+ +EY  H Y RN  L  +   D+ YP R  F+LL +VL+E+        W +     +Q +  L+  L+KYQ+P +AD + K+Q ELDETKIILH T++S+L RGEKLD LV KS  L   S+ FYK A+K N CC I+
Sbjct:    1 MKLYSLSVLY---KGDNKVSLLKSAYDVSSFSFFQRSSIQEFMAFTSQLIVERSDKGSRSSVKEQEYLCHVYVRNDSLAGVVIADNEYPPRVCFTLLEKVLEEFSTQVDRIDWPSGSPATIQ-YNALDSYLSKYQNPRDADPMSKVQAELDETKIILHNTMESLLQRGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCGIM 198          
BLAST of CN188809 vs. ExPASy Swiss-Prot
Match: YKT6_DANRE (Synaptobrevin homolog YKT6 OS=Danio rerio GN=ykt6 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.155e-36
Identity = 87/201 (43.28%), Postives = 123/201 (61.19%), Query Frame = -1
Query:  199 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 795
            MK+ +L VL  +   +   +L    D+S F +FQRSSV+EF+ F +  + +R+  G R SV+ +EY  H Y RN  L  +   D  YP R  F+LL++VLDE+ +      W +     +Q +  L+  L +YQ+P EAD + K+Q ELDETKIILH T++S+L RGEKLD LV+KS  L   S+ FYK A+K N CC I+
Sbjct:    1 MKLYSLSVL--HKGSTKANLLKATYDLSSFSFFQRSSVQEFMTFTSALIVERSALGSRASVKEQEYLCHVYVRNDNLGGVVIADSEYPSRVCFTLLDKVLDEFSRQVNSIDWPSGSPATIQ-YTALDSHLARYQNPREADAMTKVQAELDETKIILHNTMESLLERGEKLDDLVQKSEHLGNQSKAFYKTARKQNSCCEIM 198          
BLAST of CN188809 vs. ExPASy Swiss-Prot
Match: YKT6_DICDI (Putative synaptobrevin homolog YKT6 OS=Dictyostelium discoideum GN=ykt6 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.473e-31
Identity = 79/200 (39.50%), Postives = 117/200 (58.50%), Query Frame = -1
Query:  208 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSY---NRNGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCC 795
            MK+ ++ + K  P G+ PV+L    ++S FG+FQR SVKE  LFV+R    RT  G+R S++H + +   +   +  GL      D  YP R + +L+   L+E+ K   ES WR  Q+D     P L++ L KYQ+P  AD ++ +Q+ LDET  I+ KT++ +  RGEKLD L  KS DLS  S+ F   A++ N+CC
Sbjct:    1 MKVYSIGLFKVVP-GNKPVLLNIVYELSSFGFFQRGSVKEVSLFVSRETVGRTNVGERVSMEHTQTQKVCHTTVDSKGLGCSVLTDSEYPGRVAHTLIRICLEEFYKVHPESEWRGLQSDVELQTPALDQLLLKYQNPETADPMMNLQKNLDETITIVKKTVEQLGQRGEKLDDLAAKSDDLSFQSKAFMNNAERMNKCC 199          
BLAST of CN188809 vs. ExPASy Swiss-Prot
Match: SEC22_SCHPO (Protein transport protein sec22 OS=Schizosaccharomyces pombe GN=sec22 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.592e-12
Identity = 43/156 (27.56%), Postives = 79/156 (50.64%), Query Frame = -1
Query:  217 ARTVGKRTPPG--QRQSVQHEEYKVHSYNRNGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPY------LNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTN 660
            A+ + KR  P   +R S++  +Y  H    NG+C +   +  YP + +FS L ++  E+  +FGE    A    ++P+ +      + ++   Y  P   D L K+  EL +   ++ K I+ +L RG+ L+ + + SSDL  +S  + K A++ N
Sbjct:   29 AKLILKRLSPTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFWNSFGEE---ALQPGLRPYAFVQFDTFMQKSKRVYNTPRANDNLDKLNTELKDVTRVMTKNIEDLLYRGDSLEKMADLSSDLRYSSAKYKKAARRVN 181          
The following BLAST results are available for this feature:
BLAST of CN188809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
YKT6_MOUSE5.540e-3946.04Synaptobrevin homolog YKT6 OS=Mus musculus GN=Ykt6... [more]
YKT6_HUMAN1.234e-3846.45Synaptobrevin homolog YKT6 OS=Homo sapiens GN=YKT6... [more]
YKT6_RAT2.328e-3745.90Synaptobrevin homolog YKT6 OS=Rattus norvegicus GN... [more]
YKT6B_XENLA3.040e-3744.06Synaptobrevin homolog YKT6-B OS=Xenopus laevis GN=... [more]
YKT6A_XENLA3.040e-3744.06Synaptobrevin homolog YKT6-A OS=Xenopus laevis GN=... [more]
YKT6_XENTR3.971e-3744.06Synaptobrevin homolog YKT6 OS=Xenopus tropicalis G... [more]
YKT6_DANRE1.155e-3643.28Synaptobrevin homolog YKT6 OS=Danio rerio GN=ykt6 ... [more]
YKT6_DICDI9.473e-3139.50Putative synaptobrevin homolog YKT6 OS=Dictyosteli... [more]
SEC22_SCHPO2.592e-1227.56Protein transport protein sec22 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188809 ID=CN188809; Name=CN188809; organism=Citrus sinensis; type=EST; length=813bp
CTTTTCCCAANCTGTTTTCATATCTTTTTGATCATCCATAACACAGAACC
AGCGGTATGAAAAAACCACAATTCTTCCAACCAAACAATTGATATATGAT
ATACACATATAATAATCACCATTTCTGTAATCCATCAGCTTCAACACTAA
AACAAATGAGTGCCATTACAGGAGAACTGCTTGCCTCGAATGCTCTTACA
GTATGGTACAACATTGATTAGTTTTCTTTGCCTGCTTGTAGAACATCTGC
GAAGCTGCACTGAGATCTGAACTCTTCTCAACTAAACTGTCCAGCTTTTC
ACCCCGTGCAAGTACACTATCGATAGTTTTATGAAGGATAATCTTTGTTT
CATCCAATTCCCTCTGAATTTTCAACAGCTTATCAGCCTCCGCTGGGTCC
TGATATTTGTTCAAAGCTTCATTTAGATAAGGCCACGGTTGCATGTTGTC
TGCCTGTGCAGTCCTCCATGATTCACCAAAATTTTTCTGATACTCATCTA
GCACCTGGTTGAGAAGAGAGAATGAGCTTCGCACTGGATAATGATCATCC
ATGAATCCCATTGCGCAAAGTCCATTCCTGTTATAAGAATGCACCTTGTA
CTCTTCGTGTTGGACGGACTGGCGCTGGCCGGGCGGAGTCCGTTTACCGA
CAGTGCGAGCGACGAAGAGGATGAACTCCTTAACGCTGGATCGTTGAAAG
TAACCGAAATGGCTAACGTCCATGGCGGTCGCTAACACAACCGGATCCGA
TCCGTCCGGGTTGCACTTCAAAACCAGTAACGCCGTGATCTTCATCCTCC
TCCTGCTGTGAAA
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