CN188801

Overview
NameCN188801
Unique NameCN188801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:41..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STRR6 (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=sodA PE=3 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.957e-40
Identity = 86/202 (42.57%), Postives = 120/202 (59.41%), Query Frame = 3
Query:  111 VTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQL------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 698
            + LP+LPY Y ALEP I  E M LHH + HQ YV N N A+E+        +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AIDA FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+DVWEHAYY++Y+NV+PDY+K  ++V+NW    ++Y
Sbjct:    3 IILPELPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYYVKYRNVRPDYIKAFFSVINWNKVDELY 197          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STRPN (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae GN=sodA PE=3 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.957e-40
Identity = 86/202 (42.57%), Postives = 120/202 (59.41%), Query Frame = 3
Query:  111 VTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQL------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 698
            + LP+LPY Y ALEP I  E M LHH + HQ YV N N A+E+        +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AIDA FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+DVWEHAYY++Y+NV+PDY+K  ++V+NW    ++Y
Sbjct:    3 IILPELPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYYVKYRNVRPDYIKAFFSVINWNKVDELY 197          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 7.781e-40
Identity = 94/210 (44.76%), Postives = 119/210 (56.67%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVH-EGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 698
            TLP LPY Y ALEP I    M++HH + HQ YV N NKA          VEQL Q L++V        +GA++ N GGH NHS+FW+ +     + G   P   L  AI++ FGS +A  QK         GSGW WL +     +L V +TANQD PL+ +A   V   P+LG+DVWEHAYYL Y+N +PDYL   WNV+NW   S  Y
Sbjct:    4 TLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADK----KGALRNNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDG--KLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWNVVNWDEVSKRY 207          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STAES (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sodA PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.327e-39
Identity = 83/200 (41.50%), Postives = 120/200 (60.00%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 698
            LP+LPY Y ALEP I  + M++HH + H  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  GE         I   +GSL+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+  +++Y
Sbjct:    5 LPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLEAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYINAFWNVVNWEKVNELY 195          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STAEQ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sodA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.327e-39
Identity = 83/200 (41.50%), Postives = 120/200 (60.00%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDT------STVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 698
            LP+LPY Y ALEP I  + M++HH + H  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  GE         I   +GSL+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+  +++Y
Sbjct:    5 LPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLEAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYINAFWNVVNWEKVNELY 195          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.327e-39
Identity = 85/208 (40.87%), Postives = 123/208 (59.13%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQL--FQALNKVDTSTVV-------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTL---VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            LP LPYDY +LEP +    M +HH + HQ YV N N A+++    + L  VD +  V        +   I+ NGGGH NHS FWK +       G  P+  +  AI+A FGS++ +  K +A  A   GSGW WL +  +   L +++T NQD PL+T  P +   +PLLG+DVWEHAYYL+Y+N +P+Y+   WNV+NW+  ++ Y+
Sbjct:    5 LPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLNAALDKFPELKDLGLVDLNKAVGTDKLPKDVATVIRNNGGGHYNHSFFWKVMTNPSNTNG--PNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWAWLSVKPDGS-LSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAWWNVVNWEQVAENYK 209          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.733e-39
Identity = 81/197 (41.12%), Postives = 120/197 (60.91%), Query Frame = 3
Query:  108 TVTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 677
            T  LP LPY Y ALEP    E M++H+ + H  YVT  N+AV    +  +K     V  L       +GA++ +GGGH NH++FW +L+P    GG  P  +L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  +++  T  P+LG+DVWEHAYYL+++N +P+Y+   WNV+NW
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMEIHYTKHHNIYVTKLNEAVSGHAELASKPGEELVANLDSVPEEIRGAVRNHGGGHANHTLFWSSLSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNNG--KLEIVSTANQDSPLSEGKT--PVLGLDVWEHAYYLKFQNRRPEYIDTFWNVINW 191          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.733e-39
Identity = 84/209 (40.19%), Postives = 122/209 (58.37%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVV--------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 707
            TLP+L Y Y+ALEP    + M++HH + HQAYV N N A+E L   L ++    ++        + +GA++ N GGH NHS+FWK+L       G     +L  AI+  FGS++A   +     A   GSGW WL L  E K  VV T    +PL+ K        PLLG+DVWEHAYYL+++N +PDY+K  WNV+NW + ++ ++++
Sbjct:    4 TLPELGYAYNALEPHFDAQTMEIHHSKHHQAYVNNANAALEGLPAELVEMYPGHLISNLDKIPAEKRGALRNNAGGHTNHSLFWKSLKK-----GTTLQGALKDAIERDFGSVDAFKAEFEKAAATRFGSGWAWLVLTAEGKLAVVSTANQDNPLMGKEVAGCEGFPLLGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDFVAERFEQK 207          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.861e-39
Identity = 86/203 (42.36%), Postives = 119/203 (58.62%), Query Frame = 3
Query:  129 PYDYSALEPAISGEIMQLHHQRRHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            PY Y ALEP    E M +HH + H  Y+TN N           K+VE+L   LN+V  +    ++ A++ NGGGH NH+ FW  L+P   GGG+P    L  AI+A FGS +A  ++ +  GA   GSGW WL ++     L V +T NQD  +T+  T  P++G+DVWEHAYYL Y+N +PDY+   WNV++W  A   YQ+
Sbjct:   25 PYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEA----IRTAVRNNGGGHANHTFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNG--ELEVTSTPNQDSPLTEGKT--PVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDWNAAEKRYQE 216          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.602e-39
Identity = 82/202 (40.59%), Postives = 120/202 (59.41%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVE-------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            LP+LPY++ ALEP I  E M++HH + H  YVT  N A+E        + + +  +D S    +Q A++ NGGGH+NHS+FW+ L P  E  G          I   +GSL+    + + + A   GSGW WL +D + K L + +T NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW    ++Y+
Sbjct:    5 LPNLPYEFDALEPYIDKETMEIHHDKHHNTYVTKLNAAIEGTDLENKSIEEIVANLD-SVPSDIQTAVRNNGGGHLNHSLFWQLLTPNSEEKGTVIDK-----IKEEWGSLDKFKDEFAKKAAGQFGSGWAWLVVDKDGK-LEIVSTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYIDAFWNVVNWNKVDELYE 197          
The following BLAST results are available for this feature:
BLAST of CN188801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_STRR65.957e-4042.57Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_STRPN5.957e-4042.57Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_DEIRA7.781e-4044.76Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODM_STAES1.327e-3941.50Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAEQ1.327e-3941.50Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_CHLRE1.327e-3940.87Superoxide dismutase [Mn], mitochondrial OS=Chlamy... [more]
SODM_LISIV1.733e-3941.12Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODM_HAEIN1.733e-3940.19Superoxide dismutase [Mn] OS=Haemophilus influenza... [more]
SODM1_BACCR3.861e-3942.36Superoxide dismutase [Mn] 1 OS=Bacillus cereus (st... [more]
SODM_STACA8.602e-3940.59Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188801 ID=CN188801; Name=CN188801; organism=Citrus sinensis; type=EST; length=773bp
ACGATCAGAACGTCACCGTTTCATTCGCGATGGCTCTCCCCCCTTTTGGC
ATCAGAAAAGCTATAGGCTTGGGTAAATCCGTCCGATTAGGGCTGCGTGG
ACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGG
AGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAGGCGTCAC
CAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGC
TTTGAACAAAGTCGATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCA
AGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTT
GCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTG
GGCTATTGACGCGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGA
GTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTG
GATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCC
GCTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTT
GGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTG
AAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATGTGTATCA
GAAAGAATGCCCTTAAGCTTGGAGCTCTTCCTTGAGCATGGAGTTCTTCG
TTTGATCTGGGTTCTCTCTTGGG
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