CN188800

Overview
NameCN188800
Unique NameCN188800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2687 contig Csv1_Contig2687:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188800 vs. ExPASy Swiss-Prot
Match: NECAP_DROME (NECAP-like protein CG9132 OS=Drosophila melanogaster GN=CG9132 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.065e-24
Identity = 56/142 (39.44%), Postives = 89/142 (62.68%), Query Frame = 2
Query:  281 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKY------LDKKKTAEEME 688
            E VL    E ++Y IPPR S   YRA +WN+ +  W G +++V+KG   ++KLEDK++G L+A   +       +E V DSSRYFV+R++++ G   R AF+G+GF +R++++D   AL DH K+      ++K+KT  + E
Sbjct:    4 ESVLIVKPEVFIYKIPPRASNRGYRAGDWNLKEPTWTGRMRLVAKGTAVVLKLEDKTSGALFANCPIDTYPGVAIEAVSDSSRYFVIRVQDDNG---RSAFLGLGFGDRSDSFDLNVALQDHFKWVKNQEQIEKEKTEPKQE 142          
The following BLAST results are available for this feature:
BLAST of CN188800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NECAP_DROME3.065e-2439.44NECAP-like protein CG9132 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188800 ID=CN188800; Name=CN188800; organism=Citrus sinensis; type=EST; length=710bp
GCAGGGGACATTCCAATTGTATTCCAATCTCATACCCACCTCTTCTCTTA
ATAGACCATTGTAATTATACTAAATTATCGTCCTGTCCTTACCCGACTGA
ACTGAAAAGTAAAAACTGAAATCCTCTTAATCTGTCTAAAAATTGGAAAA
AGAAAAAAGAAAAAAGAGTGTATTGATTTTCTCTCTTTAGATCATGATGG
CGAAGGAAGAAGAGAAGAAAGTAAGAGAAATAGAGGATCAAAACGACGTC
GTGGGCGAGAACGAAGAAACTGAAGCTATAGAGTTTGTTCTCTTTCAAGT
CTCGGAATGTTACGTTTATTTGATACCCCCGAGGAAAAGTGCAGCTTCAT
ACAGGGCTGATGAATGGAATGTTAACAAATGGGCATGGGAGGGAATGCTA
AAAGTTGTCAGCAAGGGAGAAGAGTGCATTATCAAACTTGAAGATAAGTC
CACAGGTGAATTATATGCTCGGGCATTTTTGAGAAAGGGTGAACTGCATC
CAGTGGAACCTGTGATTGATAGCAGCAGGTACTTTGTTCTTCGGATAGAG
GAAAACATAGGTGGTCGCCTTAGGCATGCTTTCATTGGCATCGGATTCCG
GGAAAGGACAGAAGCTTATGATTTCCAAGCAGCCCTTCATGATCACATGA
AATATTTGGACAAAAAGAAAACTGCAGAAGAGATGGAACAGCAATTCCAG
AGCACATCAG
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