CN181496

Overview
NameCN181496
Unique NameCN181496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12923 contig Csv1_Contig12923:24..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.634e-48
Identity = 92/169 (54.44%), Postives = 117/169 (69.23%), Query Frame = 1
Query:  148 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            +G II+R MF+ +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC ++E++P     DP       YYGRGPIQL+  YNY              NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITP----SDP------PYYGRGPIQLTHKYNYQ--LAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVI 182          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.001e-47
Identity = 90/168 (53.57%), Postives = 115/168 (68.45%), Query Frame = 1
Query:  151 GKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            G I++RE+F+ +L +RN++ CPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HET GG      G +  GYCF+ ++    D  D       +YYGRGPIQL+   NY R            NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VI
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQI----DQSD-------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVI 180          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.001e-47
Identity = 94/175 (53.71%), Postives = 113/175 (64.57%), Query Frame = 1
Query:  148 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS--DYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEV 651
            +  I+SR +FD +L +RND  CPA  FYTYDAF+ AA AFPGF  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYCF  E    +  DYC  +  +PC    KYYGRGPIQLS+N+NY               +PDL+A+D  +SF +A WFWMT Q PKPSCH V
Sbjct:   81 VASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAV 253          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.307e-47
Identity = 88/168 (52.38%), Postives = 112/168 (66.67%), Query Frame = 1
Query:  151 GKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            G I++RE+F+ +L +RN++ CPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HET GG      G +  GYCF+ ++               +YYGRGPIQL+   NY R            NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH VI
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVI 180          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.492e-46
Identity = 84/169 (49.70%), Postives = 111/169 (65.68%), Query Frame = 1
Query:  163 SREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDP----NYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVI 654
            +  MF+ +L  RN++ CP +GFYTYDA+  A + +PGFG +G++  RKRE+AAFFAQT  ET+G         + WGYC ++E++P SDYCDP    +YPC   YYGRGP+QL WNYNY  C           + P+ +ATDPVLSF++A+WFWM       PSCHEVI
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC--GNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVI 234          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.931e-45
Identity = 90/170 (52.94%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  145 ELGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            ++G I++ ++F+++L+ RND+RCPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HETTGG   A  G +A GYCF+ E +               +YGRGPIQL+   NY              NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VI
Sbjct:   18 DVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMG----------SGFYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVI 174          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.953e-43
Identity = 81/175 (46.29%), Postives = 111/175 (63.43%), Query Frame = 1
Query:  148 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCD------PNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            +  I+S +++  L  +++D  CPARGFYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW  AP G YAWG C+  E++P S YCD      P YP +  Y+GRGPIQ+SWN+NY               NP+++A    ++F++A+WFWMT +  KPSCH+V+
Sbjct:   49 VSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGK-SYHGRGPIQISWNFNY--GPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVM 220          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.423e-43
Identity = 90/169 (53.25%), Postives = 111/169 (65.68%), Query Frame = 1
Query:  148 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            +G I++ ++FD +L+ RND RC A  FYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HETTGG   +P G YA GYCF+ E +   +           YYGRGPIQL+   NY              NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI
Sbjct:   26 VGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGN----------GYYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVI 181          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.695e-43
Identity = 88/169 (52.07%), Postives = 113/169 (66.86%), Query Frame = 1
Query:  148 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            +G I++ ++F+++L+ RND RCPA GFYTYDAFI AA +FPGFG SG++T R++EIAAFF QT HETTGG   A    +  GYCF+ +    +D  D       +YYGRGPIQL+   NY +            NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VI
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ----NDQSD-------RYYGRGPIQLTNQNNYEKA--GNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVI 180          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.821e-42
Identity = 87/169 (51.48%), Postives = 113/169 (66.86%), Query Frame = 1
Query:  148 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            +G I++ ++F+++L+ RND RCPA GFYTYDAFI AA +FPGFG +G++T R++EIAAFF QT HETTGG   A    +  GYCF+ +    +D  D       +YYGRGPIQL+   NY +            NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VI
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ----NDQSD-------RYYGRGPIQLTNRNNYEKA--GTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVI 180          
The following BLAST results are available for this feature:
BLAST of CN181496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI11_ORYSJ2.634e-4854.44Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI1.001e-4753.57Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI12_ORYSJ1.001e-4753.71Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLLC1.307e-4752.38Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_POPTR5.492e-4649.70Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIB_SOLLC7.931e-4552.94Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI10_ORYSJ1.953e-4346.29Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_PETHY7.423e-4353.25Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIP_TOBAC9.695e-4352.07Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIQ_TOBAC2.821e-4251.48Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001A14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181496 ID=CN181496; Name=CN181496; organism=Citrus sinensis; type=EST; length=656bp
GAGGGTTGCTTTCAAATGAGGCTTATTGGGTCCTTACTAATTTTCTCTCT
AGTTTTATCTTTTGTACTAGGAGGCTCAGCACAGAACTGTGGAAGCGGCG
TTGTGTACGGTGGACGTGATACCGGCCATGGGACGCATGGCGGTGAACTG
GGCAAGATCATCTCAAGGGAGATGTTTGATGACTTGCTTGAGTATAGAAA
TGATGAACGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTTATAG
AGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAAACCATG
CGTAAAAGAGAAATCGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTAC
TGGGGGATGGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCT
TTATAAGCGAAGTTAGCCCTCCGTCCGACTACTGTGATCCTAACTATCCA
TGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCTCTTGGAATTA
CAATTACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGA
ACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCA
ATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGT
CATTAT
back to top