CN181496

Overview
NameCN181496
Unique NameCN181496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12923 contig Csv1_Contig12923:24..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.021e-40
Identity = 82/169 (48.52%), Postives = 98/169 (57.99%), Query Frame = 1
Query:  148 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            L  II   MFDD+L+YRND +CPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF  QT HET G WP A G +Y WGYC +                              NYNY  C             P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI
Sbjct:   85 LSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM------------------------------NYNYGLCGDDLNLPLL--QEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVI 221          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40
Identity = 86/174 (49.43%), Postives = 109/174 (62.64%), Query Frame = 1
Query:  148 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEV----SPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            +G +I++ +F+ +L  R++ +CPARGFYTYDAFI AA +FP FG SG    + +RE+AAFF QT HETTGG       ++ WGYCF  E+    SPP             YYGRGPIQL+   NY               NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI
Sbjct:   32 VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNYQAA--GNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVI 189          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.602e-37
Identity = 78/174 (44.83%), Postives = 110/174 (63.22%), Query Frame = 1
Query:  148 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVI 654
            +  +++ + F+ +L +R+D  CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF AQT H T+       GG Y+WGYC+       SD+C PN  +PC  GK Y+ RGP+Q+++NYNY               NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVV 261          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.602e-37
Identity = 78/174 (44.83%), Postives = 110/174 (63.22%), Query Frame = 1
Query:  148 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVI 654
            +  +++ + F+ +L +R+D  CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF AQT H T+       GG Y+WGYC+       SD+C PN  +PC  GK Y+ RGP+Q+++NYNY               NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVV 261          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.557e-35
Identity = 78/169 (46.15%), Postives = 100/169 (59.17%), Query Frame = 1
Query:  148 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            +  +IS  +F+ +L +R        GFYTYDAFI AA++FP F  +G+  +RKRE+AAF AQT HETTGGWP AP G Y        E+   SD           Y+GRGPIQ+S+NYNY               NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPY--------ELGSTSD-----------YFGRGPIQISYNYNY--GAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVI 140          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.514e-32
Identity = 68/170 (40.00%), Postives = 102/170 (60.00%), Query Frame = 1
Query:  157 IISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVS-PPSDYC-DPNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 654
            +++  +FD +  +R D  CP++GFY+Y +F+ AA++FP FG  G+   RKRE+AAF A     T+G   D     +AWG C I+  +   +D+C   ++PC    KY  RGPIQL+ N+NY               NPDL+  DP++SFK+A+WFWM+    KPSCH+++
Sbjct:  133 VVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIV 297          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.245e-26
Identity = 66/161 (40.99%), Postives = 92/161 (57.14%), Query Frame = 1
Query:  148 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCD---PNYPC-RGK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFW 612
            +  I++ E F  L+  + D+ C A+GFYT DAF+ AA  +P FG +G+    KREIAAFFA   HET               +C+I E+  PS +YCD     +PC  GK YYGRGP+Q+SWN+NY               +PD +A  PVL+F++A+W+W
Sbjct:   68 VASIVTPEFFAALVA-QADDGCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYW 212          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.406e-25
Identity = 58/142 (40.85%), Postives = 80/142 (56.34%), Query Frame = 1
Query:  211 CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDP---NYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTA 621
            C  + FYT  AF+ A + +PGF + G++   KREIAAFFA   HET               +C+ISE++  + YCDP    +PC    KYYGRGP+Q+SWNYNY               +P  +A D V++FK+A+WFWM +
Sbjct:   89 CEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.092e-25
Identity = 59/140 (42.14%), Postives = 79/140 (56.43%), Query Frame = 1
Query:  211 CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 615
            C  + FYT  AF+ A  A+PGF + G E   KREIAAFFA   HET               +C+ISE++  + YCD +   +PC    KYYGRGP+Q+SWNYNY               +P+ +A D V++FK+A+WFWM
Sbjct:  100 CEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          
BLAST of CN181496 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 9.116e-25
Identity = 60/153 (39.22%), Postives = 87/153 (56.86%), Query Frame = 1
Query:  157 IISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 615
            I+++E +D +   +    CP + FYT   F+EA  A+PGFG    +  RKREIAA+FA   HET           +A  YC  S+  P    C+PN     +Y+GRGP+QLSWNYNY+             N+PD++  DP++SFK+++WFW+
Sbjct:   49 IVTQEFWDGIAS-QAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYP----CNPN----KEYFGRGPMQLSWNYNYI--DAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          
The following BLAST results are available for this feature:
BLAST of CN181496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_POPTR2.021e-4048.52Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI8_ORYSJ4.503e-4049.43Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSJ1.602e-3744.83Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.602e-3744.83Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA2.557e-3546.15Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI4.514e-3240.00Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ8.245e-2640.99Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE1.406e-2540.85Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE4.092e-2542.14Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIT_DIOJA9.116e-2539.22Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181496 ID=CN181496; Name=CN181496; organism=Citrus sinensis; type=EST; length=656bp
GAGGGTTGCTTTCAAATGAGGCTTATTGGGTCCTTACTAATTTTCTCTCT
AGTTTTATCTTTTGTACTAGGAGGCTCAGCACAGAACTGTGGAAGCGGCG
TTGTGTACGGTGGACGTGATACCGGCCATGGGACGCATGGCGGTGAACTG
GGCAAGATCATCTCAAGGGAGATGTTTGATGACTTGCTTGAGTATAGAAA
TGATGAACGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTTATAG
AGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAAACCATG
CGTAAAAGAGAAATCGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTAC
TGGGGGATGGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCT
TTATAAGCGAAGTTAGCCCTCCGTCCGACTACTGTGATCCTAACTATCCA
TGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCTCTTGGAATTA
CAATTACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGA
ACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCA
ATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGT
CATTAT
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