CN181495

Overview
NameCN181495
Unique NameCN181495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:479..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  281 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 589
            +    G+GA      EIV TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A+V      W++HW++WVGP IG  LA + ++
Sbjct:  176 YTKGDGLGA------EIVGTFILVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQ 278          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: NIP31_MAIZE (Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 44/146 (30.14%), Postives = 71/146 (48.63%), Query Frame = -1
Query:  236 QLLGSTVACLLLK-----FVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTE 658
            Q L S  A   LK     F++ G T     +S+      A   E +++F L++ V A A D +  ++G +A IA+G  V  NIL  G   G SMNP  + GPA+ + ++   W+Y + P +G      VY+   +   + + P T+
Sbjct:  158 QALASVCAAFALKGVFHPFLSGGVTVPDATVSTA----QAFFTEFIISFNLLFVVTAVATDTR--AVGELAGIAVGAAVTLNILVAGPTTGGSMNPVRTLGPAVAAGNYRQLWIYLLAPTLGALAGASVYKAVKLRDENGETPRTQ 297          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: NIP23_MAIZE (Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 41/128 (32.03%), Postives = 65/128 (50.78%), Query Frame = -1
Query:  278 AQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 661
            AQ  G+  A  +LK V            SG   W+A+  EIV+TF +++   A A D +  ++G +A +A+G  V    +  G   G SMNPA +  PA+ S  +   W+Y++GP++G      VY +
Sbjct:  138 AQFTGAMCAAFVLKAVLQPIAVIGTTTPSGPH-WHALAIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVFTGLWIYFLGPVVGTLSGAWVYTY 262          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: NIP31_ORYSJ (Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = -1
Query:  245 QLLGSTVACLLLK-----FVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLP 658
            Q+LGS  A   LK     F++ G T     +S+      A   E ++TF L++ V A A D +  ++G +A IA+G  V  NIL  G   G SMNP  + GPA+ + ++   W+Y + P +G      VY    +   + + P
Sbjct:  167 QVLGSICAGFALKGVFHPFLSGGVTVPDPTISTA----QAFFTEFIITFNLLFVVTAVATDTR--AVGELAGIAVGAAVTLNILIAGPTTGGSMNPVRTLGPAVAAGNYRQLWIYLIAPTLGAVAGAGVYTAVKLRDENGETP 303          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  281 FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 589
            +    G+GA      EIV TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     +W +HW++WVGP IG  LA I ++
Sbjct:  173 YTKGDGLGA------EIVGTFILVYTVFS-ATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQ 275          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = -1
Query:  281 AFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 592
            A A+S G    + +  E+V TF LVYTV++ A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A++      W  HW++WVGP  G  LA + ++
Sbjct:  173 ANAVSPGYTKGDGLGAEVVGTFVLVYTVFS-ATDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQ 282          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: NIP22_ORYSJ (Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 40/128 (31.25%), Postives = 66/128 (51.56%), Query Frame = -1
Query:  278 AQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 661
            AQ  G+  A  +L+ V            +G   W+A+V EIV+TF +++   A A D +  ++G +A +A+G  V    +  G   G SMNPA +  PA+ S  +   W+Y++GP++G      VY +
Sbjct:  135 AQFTGAMCAAFVLRAVLYPIEVLGTTTPTGPH-WHALVIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVYTGLWIYFLGPVVGTLSGAWVYTY 259          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: NIP61_ARATH (Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 44/136 (32.35%), Postives = 66/136 (48.53%), Query Frame = -1
Query:  254 AQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 661
            AQ++ S  A   LK V    T S       VG   A   E +++F L++ V A A D +  ++G +A IA+G  V  NIL  G    ASMNP  + GPA+ + ++   WVY   P++G  +    Y    + +  E
Sbjct:  163 AQVMASVSAAFALKAVFE-PTMSGGVTVPTVGLSQAFALEFIISFNLMFVVTAVATDTR--AVGELAGIAVGATVMLNILIAGPATSASMNPVRTLGPAIAANNYRAIWVYLTAPILGALIGAGTYTIVKLPEEDE 295          
The following BLAST results are available for this feature:
BLAST of CN181495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
PIP2_PEA1.982e-1139.09Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
NIP31_MAIZE1.982e-1130.14Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1[more]
NIP23_MAIZE1.982e-1132.03Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1[more]
NIP31_ORYSJ2.588e-1131.47Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica G... [more]
PIP11_MAIZE3.381e-1139.09Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP16_MAIZE5.767e-1136.94Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
NIP22_ORYSJ5.767e-1131.25Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica G... [more]
NIP61_ARATH7.531e-1132.35Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181495 ID=CN181495; Name=CN181495; organism=Citrus sinensis; type=EST; length=661bp
GAGGGGTTAATGAAATAGACATCAAGCCAATTGAAGCGAGAGTAGAAAGA
CAAAGCCATAGCCTGGGACTCCATAATTATCGCGATACAATAATCCAGCA
GCTCATGACGATGGAAACAGATCAACGGCCATAAATTAAACACAAATTAA
AAATAAAAAGAAAGAACCTCGGTAAAAGCAAATTAAATACAACATCCGTG
CAAACTCACATAGATGGCAAGCTTTTAGCTTAGTACTCGGTTGTTGGGAG
CTGCTCATGCGACTGGTTAATGAAGAAGAACTCGTAGACGATGCCAGCTA
GCCCACCACCGATGAGTGGCCCGACCCAGTAGACCCAGTGGTTGTCCCAG
CTCCAGCTCACCAAAGCTGGCCCGAATGACACTGCTGGGTTCATTGAAGC
TCCATCAAACGCCCCGCCCGCCAAGATGTTGGCTCCTACAATGAAACCAA
TTGCAATTGGTGCAATTGTCCCCAAGCTTCCCTTCTTTGGGTCCAGGGCT
GTGGCATACACTGTGTACACTAGTCCGAATGTCATCACGATCTCGAAAAC
GACTGCGTTCCATGCACCAACTCCAGATGAGAGAGCAAAAGCAGATGTGG
TCTGGCCGTTGGTAACGAACTTAAGAAGCAAGCATGCGACGGTGGATCCA
AGAAGCTGGGC
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