CN181495

Overview
NameCN181495
Unique NameCN181495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:479..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.227e-38
Identity = 73/139 (52.52%), Postives = 98/139 (70.50%), Query Frame = -1
Query:  248 AQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE-FFFINQSHEQL 661
            AQLL S++AC+LL++++ G  T   AL +G+     +V E+++TF L++  YA  LDP+   + TI P+  G IVGAN LAGG F GASMNPA SFGPA+ +  W NHWVYW+GPL+GG LAG VYE  F +N++HE L
Sbjct:  115 AQLLASSLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDPRS-QVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATGVWTNHWVYWIGPLLGGSLAGFVYESLFMVNKTHEPL 252          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.233e-37
Identity = 78/144 (54.17%), Postives = 102/144 (70.83%), Query Frame = -1
Query:  236 AQLLGSTVACLLLKFVTNGQ-TTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFIN-QSHEQLPTTE 661
            AQLLGS++ACLLL  +T G+      A + GVGA  AV  E V+TF L++ VYAT +D ++ ++G + P+ +G +VGANILAGG + GASMNPA SFGPAL +  W +HW+YWVGPLIGG LAG+VYE  F+    HE LP  +
Sbjct:  106 AQLLGSSLACLLLAALTGGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRR-AVGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPALAAGEWADHWIYWVGPLIGGPLAGLVYEGLFMGPPGHEPLPRND 248          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.044e-36
Identity = 73/139 (52.52%), Postives = 93/139 (66.91%), Query Frame = -1
Query:  248 AQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE-FFFINQSHEQL 661
            AQLL S+ AC+LL+F++ G  T   AL  G+     +V E+++TF L++  YA  LDP+   +  I P+  G IVGAN LAGG F GASMNPA SFGPAL +  W NHWVYW+GPL+GG LAG VYE  F + + HE L
Sbjct:  113 AQLLASSAACVLLRFLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDPRS-QVRAIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPALATGDWTNHWVYWIGPLLGGPLAGFVYESLFLVQKMHEPL 250          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.080e-33
Identity = 74/141 (52.48%), Postives = 92/141 (65.25%), Query Frame = -1
Query:  245 AQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE--FFFINQSHEQLP 661
            AQ+L S+ AC LL+++T G  T   AL+ GVG    VV E V TF L++ +YAT LDP+K   G   P+  G +VGAN +AG A  GASMNPA SFGPA+ S  W +HWVYWVGPL GG LA +VYE  F     +H+ LP
Sbjct:  106 AQMLASSAACFLLRWLTGGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRKLLPGA-GPLLTGLLVGANSVAGAALSGASMNPARSFGPAVASGVWTHHWVYWVGPLAGGPLAVLVYECCFMAAAPTHDLLP 245          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.411e-33
Identity = 72/144 (50.00%), Postives = 92/144 (63.89%), Query Frame = -1
Query:  245 AQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFIN-----QSHEQLP 661
            AQL GS++ACLLL+ +T G  T   AL+ GVG    V  E V TF L+  + AT LDP++ +     P+  G +VGAN +AGGA  GASMNPA SFGPAL +  W +HWVYWVGPL GG LA + YE  F++      +H+ LP
Sbjct:  111 AQLAGSSLACLLLRCLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANTVAGGALTGASMNPARSFGPALATGEWAHHWVYWVGPLAGGPLAVVAYELLFMDVEDAGGAHQPLP 254          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.346e-26
Identity = 59/127 (46.46%), Postives = 82/127 (64.57%), Query Frame = -1
Query:  281 AQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE 661
            +Q++ S +ACL+LK     Q    + ++  +  + A V E V+ F LVYTV+ TA DP++G    + PI IGF+ GAN+LA G F G SMNPA +FG A+V  S+ N  VYWVGPL+GG  A +VY+
Sbjct:  111 SQMIASVMACLVLKVTVMEQHVPIYKIAGEMTGFGASVLEGVLAFVLVYTVF-TASDPRRGLPLAVGPIFIGFVAGANVLAAGPFSGGSMNPACAFGSAMVYGSFKNQAVYWVGPLLGGATAALVYD 236          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22
Identity = 53/135 (39.26%), Postives = 82/135 (60.74%), Query Frame = -1
Query:  281 AQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLG--------TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE 661
            +Q+LGST ACL+L +++ GQ      ++  +  + A + E V+TF +VYTV+    DP+ G  G         +  + +G + GA +LA G+  GASMNPA SFGPA+VS  + N  VYW GP++G  +A +V++
Sbjct:  106 SQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVHVAG-DPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAVVSGHYSNQAVYWAGPMVGAAVAALVHQ 239          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.257e-22
Identity = 54/133 (40.60%), Postives = 82/133 (61.65%), Query Frame = -1
Query:  272 AQLLGSTVACLLLKFVTNGQTTSAFALSSGVG---AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 661
            AQ LG+ +   +L  VT         +++  G   A + ++ E+++TF LV+T++A+    +    G+IA +AIGF V    L    + GASMNPA SFGPA++  +W+NHW+YWVGP+IG  LAG +YE+ F
Sbjct:  124 AQCLGAIIGAGILYLVTPPNVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 255          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 53/133 (39.85%), Postives = 82/133 (61.65%), Query Frame = -1
Query:  272 AQLLGSTVACLLLKFVTNGQTTSAFALSSGVG---AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 661
            AQ LG+ +   +L  VT         +++  G   A + ++ E+++TF LV+T++A+    +    G++A +AIGF V    L    + GASMNPA SFGPA++  +W+NHW+YWVGP+IG  LAG +YE+ F
Sbjct:  121 AQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 252          
BLAST of CN181495 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.483e-22
Identity = 54/133 (40.60%), Postives = 82/133 (61.65%), Query Frame = -1
Query:  272 AQLLGSTVACLLLKFVTNGQTTSAFALSSGVG---AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 661
            AQ LG+ +   +L  VT         +++  G   A + ++ E+++TF LV+T++A+    +    G+IA +AIGF V    L    + GASMNPA SFGPA++  +W+NHW+YWVGP+IG  LAG +YE+ F
Sbjct:  121 AQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF 252          
The following BLAST results are available for this feature:
BLAST of CN181495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
TIP42_MAIZE7.227e-3852.52Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP43_ORYSJ1.233e-3754.17Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP41_MAIZE1.044e-3652.52Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP43_MAIZE1.080e-3352.48Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP42_ORYSJ1.411e-3350.00Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP51_ARATH6.346e-2646.46Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP51_ORYSJ1.911e-2239.26Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
AQP4_NOTAL4.257e-2240.60Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_RAT5.560e-2239.85Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_DIPME9.483e-2240.60Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181495 ID=CN181495; Name=CN181495; organism=Citrus sinensis; type=EST; length=661bp
GAGGGGTTAATGAAATAGACATCAAGCCAATTGAAGCGAGAGTAGAAAGA
CAAAGCCATAGCCTGGGACTCCATAATTATCGCGATACAATAATCCAGCA
GCTCATGACGATGGAAACAGATCAACGGCCATAAATTAAACACAAATTAA
AAATAAAAAGAAAGAACCTCGGTAAAAGCAAATTAAATACAACATCCGTG
CAAACTCACATAGATGGCAAGCTTTTAGCTTAGTACTCGGTTGTTGGGAG
CTGCTCATGCGACTGGTTAATGAAGAAGAACTCGTAGACGATGCCAGCTA
GCCCACCACCGATGAGTGGCCCGACCCAGTAGACCCAGTGGTTGTCCCAG
CTCCAGCTCACCAAAGCTGGCCCGAATGACACTGCTGGGTTCATTGAAGC
TCCATCAAACGCCCCGCCCGCCAAGATGTTGGCTCCTACAATGAAACCAA
TTGCAATTGGTGCAATTGTCCCCAAGCTTCCCTTCTTTGGGTCCAGGGCT
GTGGCATACACTGTGTACACTAGTCCGAATGTCATCACGATCTCGAAAAC
GACTGCGTTCCATGCACCAACTCCAGATGAGAGAGCAAAAGCAGATGTGG
TCTGGCCGTTGGTAACGAACTTAAGAAGCAAGCATGCGACGGTGGATCCA
AGAAGCTGGGC
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