CN181493

Overview
NameCN181493
Unique NameCN181493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9664 contig Csv1_Contig9664:814..1451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATB3_GIALA (Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.675e-28
Identity = 59/122 (48.36%), Postives = 75/122 (61.48%), Query Frame = -2
Query:  251 CVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAG 616
            C  KC   + L    K      Y +  D   IM  +   GP++ +FTVY DF +Y+SGVY+H  G V GGHAV ++G+GT DDG DYWI+ N W   WG DGYF+I R +NECGIEE V+ G
Sbjct:  176 CPTKCADGSDLPHLYKATKAVDYGL--DAPAIMKALATGGPLQTAFTVYSDFMYYESGVYQHTYGRVEGGHAVDMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRIIRMTNECGIEEQVIGG 295          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATB2_GIALA (Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.327e-25
Identity = 53/122 (43.44%), Postives = 75/122 (61.48%), Query Frame = -2
Query:  251 CVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAG 616
            C  KC   +     +   S   Y +  D   +M  +  +GP++V+F V+ DF +Y+SGVY+H  G + GGHAV+++G+GT DDG DYWI+ N W   WG DGYF++ RG N+C IEE   AG
Sbjct:  177 CPTKCADGSSKVHLATATSYKDYGL--DIPAMMKALSTSGPLQVAFLVHSDFMYYESGVYQHTYGYMEGGHAVEMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRMIRGINDCSIEEQAYAG 296          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: TINAG_HUMAN (Tubulointerstitial nephritis antigen OS=Homo sapiens GN=TINAG PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.622e-23
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = -2
Query:  254 YPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGD--------VMGGHAVKLIGWGT----SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVA 631
            + T  C     K N++++ S       YR++S+  +IM EI +NGPV+    V EDF HYK+G+Y+H+T           +  HAVKL GWGT        E +WI AN W +SWG +GYF+I RG NE  IE+ ++A
Sbjct:  333 HATKPCPNNVEKSNRIYQCSP-----PYRVSSNETEIMKEIMQNGPVQAIMQVREDFFHYKTGIYRHVTSTNKESEKYRKLQTHAVKLTGWGTLRGAQGQKEKFWIAANSWGKSWGENGYFRILRGVNESDIEKLIIA 465          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: TINAG_BOVIN (Tubulointerstitial nephritis antigen OS=Bos taurus GN=TINAG PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.613e-23
Identity = 60/154 (38.96%), Postives = 85/154 (55.19%), Query Frame = -2
Query:  206 YPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGD--------VMGGHAVKLIGWGT----SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEITSAD 631
            + T  C     K N++++ S       YR++S+  +IM EI +NGPV+    V+EDF +YK+G+Y+HIT              HAVKL GWGT        E +WI AN W +SWG +GYF+I RG NE  IE+ ++A          ++TSAD
Sbjct:  333 HATTPCPNSIEKSNRIYQCSP-----PYRVSSNETEIMREIMQNGPVQAIMQVHEDFFNYKTGIYRHITSTNEDSEKYRKFRTHAVKLTGWGTLRGAQGQKEKFWIAANSWGKSWGENGYFRILRGVNESDIEKLIIAAW-------GQLTSAD 474          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATB1_GIALA (Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 6.163e-23
Identity = 44/91 (48.35%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  254 IMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDV-MGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVA 523
            IM  +   GP++    VY D ++Y+SGVYKH  G + +G HA++++G+GT+DDG DYWI+ N W   WG +GYF+I RG NEC IE+++ A
Sbjct:  209 IMGMLVAGGPLQTMIVVYADLSYYESGVYKHTYGTINLGFHALEIVGYGTTDDGTDYWIIKNSWGPDWGENGYFRIVRGVNECRIEDEIYA 299          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATC_PONAB (Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.382e-21
Identity = 53/133 (39.85%), Postives = 76/133 (57.14%), Query Frame = -2
Query:  236 CVKKNQLWR--NSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-------DVMGGHAVKLIGWGT-SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 604
            C  K   +R  +S+++ +  +    +   +  E+  +GP+ V+F VY+DF HYK G+Y H TG         +  HAV L+G+GT S  G DYWI+ N W   WG DGYF+I+RG++EC IE   VA  P  K
Sbjct:  331 CKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHH-TGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGEDGYFRIRRGTDECAIESIAVAATPIPK 462          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATC_MACFA (Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=CTSC PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.382e-21
Identity = 53/133 (39.85%), Postives = 78/133 (58.65%), Query Frame = -2
Query:  236 CVKKNQLWR--NSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-------DVMGGHAVKLIGWGT-SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 604
            C  K   +R  +S+++ +  +    +   +  E+  +GP+ V+F VY+DF HY++G+Y H TG         +  HAV L+G+GT S  G DYWI+ N W  SWG DGYF+I+RG++EC IE   VA  P  K
Sbjct:  331 CKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVYHGPLAVAFEVYDDFLHYQNGIYHH-TGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTSWGEDGYFRIRRGTDECAIESIAVAATPIPK 462          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATC_CANFA (Dipeptidyl-peptidase 1 (Fragment) OS=Canis familiaris GN=CTSC PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.769e-21
Identity = 53/131 (40.46%), Postives = 77/131 (58.78%), Query Frame = -2
Query:  236 KKNQLWR--NSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-------DVMGGHAVKLIGWGT-SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 598
            K N  +R  +S++Y +  +    +   +  E+ ++GP+ V+F VY+DF HY+ G+Y H TG         +  HAV L+G+GT S  G DYWI+ N W   WG DGYF+I+RG++EC IE   VA  P  K
Sbjct:  305 KPNDCFRYYSSEYYYVGGFYGACNEALMKLELVRHGPMAVAFEVYDDFFHYQKGIYYH-TGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGSRWGEDGYFRIRRGTDECAIESIAVAATPIPK 434          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATC_HUMAN (Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.285e-20
Identity = 52/133 (39.10%), Postives = 76/133 (57.14%), Query Frame = -2
Query:  236 CVKKNQLWR--NSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-------DVMGGHAVKLIGWGT-SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 604
            C  K   +R  +S+++ +  +    +   +  E+  +GP+ V+F VY+DF HYK G+Y H TG         +  HAV L+G+GT S  G DYWI+ N W   WG +GYF+I+RG++EC IE   VA  P  K
Sbjct:  331 CKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHH-TGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPK 462          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATC_RAT (Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Ctsc PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 4.883e-20
Identity = 51/142 (35.92%), Postives = 77/142 (54.23%), Query Frame = -2
Query:  236 PAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-------DVMGGHAVKLIGWGTSD-DGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 637
            P  P   C+R        + +S++Y +  +    +   +  E+ K+GP+ V+F V++DF HY SG+Y H TG         +  HAV L+G+G     G DYWI+ N W   WG  GYF+I+RG++EC IE   +A +P  K
Sbjct:  329 PCKPKENCLR--------YYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHH-TGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAAIPIPK 461          
The following BLAST results are available for this feature:
BLAST of CN181493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CATB3_GIALA1.675e-2848.36Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=... [more]
CATB2_GIALA1.327e-2543.44Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=... [more]
TINAG_HUMAN1.622e-2340.58Tubulointerstitial nephritis antigen OS=Homo sapie... [more]
TINAG_BOVIN3.613e-2338.96Tubulointerstitial nephritis antigen OS=Bos taurus... [more]
CATB1_GIALA6.163e-2348.35Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=... [more]
CATC_PONAB3.382e-2139.85Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=... [more]
CATC_MACFA3.382e-2139.85Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=C... [more]
CATC_CANFA5.769e-2140.46Dipeptidyl-peptidase 1 (Fragment) OS=Canis familia... [more]
CATC_HUMAN1.285e-2039.10Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=... [more]
CATC_RAT4.883e-2035.92Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Cts... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181493 ID=CN181493; Name=CN181493; organism=Citrus sinensis; type=EST; length=638bp
GAGGTTTTTTATTACAACTGGTTCTATTTTTACACACAACATTAAACTCC
ATTAATACATTCAATTATGCAAGACGGGAGCTTCCCATTTCATGCCTTGA
TAGCTTAGGTTCAACGATACACCCCTATAGCTACACATTTGATATATAAA
TAACAACATGAAGGTATAGCAAAGTCTGCTCTCAAGCTGAAGCATCCTCA
AACATATCTGCACTTGTAATCTCTTTGACAAGATTTTTGGATGAAGGCAA
ACCAGCAACCACATCCTCTTCAATACCACACTCATTTGATCCTCTTTTAA
TCTTGAAGTAACCATCCGCACCCCAGCTTCTATTCCACTGATTAGCGAGA
ATCCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAAC
AGCATGACCCCCCATTACATCGCCTGTGATGTGTTTGTAGACCCCAGATT
TGTAGTGAGCAAAATCCTCATAAACTGTGAAGGAAACTTCAACTGGTCCA
TTCTTGTAAATTTCTGCCATTATGTCCTCTGGATCAGAATTGATTCTATA
TGCACTAATACTGTAGTGCTTTGAATTCCTCCAAAGCTGGTTTTTCTTGA
CGCACTTCCTCACACACTTTGGAGTAGGATATGCCGGC
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