CN181493

Overview
NameCN181493
Unique NameCN181493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9664 contig Csv1_Contig9664:814..1451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATC_MOUSE (Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.378e-20
Identity = 51/142 (35.92%), Postives = 77/142 (54.23%), Query Frame = -2
Query:  236 PAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-------DVMGGHAVKLIGWGTSD-DGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 637
            P  P   C+R        + +S +Y +  +    +   +  E+ K+GP+ V+F V++DF HY SG+Y H TG         +  HAV L+G+G     G +YWI+ N W  +WG  GYF+I+RG++EC IE   VA +P  K
Sbjct:  329 PCKPRENCLR--------YYSSDYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHH-TGLSDPFNPFELTNHAVLLVGYGRDPVTGIEYWIIKNSWGSNWGESGYFRIRRGTDECAIESIAVAAIPIPK 461          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: YCF2E_CAEEL (Uncharacterized peptidase C1-like protein F26E4.3 OS=Caenorhabditis elegans GN=F26E4.3 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 8.330e-20
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = -2
Query:  257 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKH--------ITGDVMGGHAVKLIGWGTSDDGED---YWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 550
            Y+++S  EDI  E+  NGPV+ +F V+EDF  Y  GVY+H         +    G H+V+++GWG          YW+ AN W   WG DGYFK+ RG N C IE  V+
Sbjct:  318 YKVSSREEDIQTELMTNGPVQATFVVHEDFFMYAGGVYQHSDLAAQKGASSVAEGYHSVRVLGWGVDHSTGKPIKYWLCANSWGTQWGEDGYFKVLRGENHCEIESFVI 426          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATC_BOVIN (Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.421e-19
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = -2
Query:  236 NSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-------DVMGGHAVKLIGWGT-SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 577
            +S+++ +  +    +   +  E+   GP+ V+F VY+DF HY+ GVY H TG         +  HAV L+G+GT +  G DYWI+ N W  SWG +GYF+I+RG++EC IE   +A  P  K
Sbjct:  342 SSEYHYVGGFYGGCNEALMKLELVHQGPMAVAFEVYDDFLHYRKGVYHH-TGLRDPFNPFELTNHAVLLVGYGTDAASGLDYWIVKNSWGTSWGENGYFRIRRGTDECAIESIALAATPIPK 462          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: TINAL_MOUSE (Tubulointerstitial nephritis antigen-like OS=Mus musculus GN=Tinagl1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.399e-19
Identity = 56/151 (37.09%), Postives = 77/151 (50.99%), Query Frame = -2
Query:  257 AYPTPKCV----------RKCVKK---NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDV--------MGGHAVKLIGWG--TSDDGE--DYWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 634
            A PTP+C+          R+   +    Q+  N  +    AYR+ SD ++IM E+ +NGPV+    V+EDF  Y+ G+Y H              G H+VK+ GWG  T  DG    YW  AN W   WG  G+F+I RG+NEC IE  V+
Sbjct:  302 ASPTPRCMMHSRAMGRGKRQATSRCPNGQVDSNDIYQVTPAYRLGSDEKEIMKELMENGPVQALMEVHEDFFLYQRGIYSHTPVSQGRPEQYRRHGTHSVKITGWGEETLPDGRTIKYWTAANSWGPWWGERGHFRIVRGTNECDIETFVL 452          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: TINAL_HUMAN (Tubulointerstitial nephritis antigen-like OS=Homo sapiens GN=TINAGL1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.210e-19
Identity = 50/125 (40.00%), Postives = 69/125 (55.20%), Query Frame = -2
Query:  257 NQLWRNSKHYSIS-AYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDV--------MGGHAVKLIGWG--TSDDGE--DYWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 592
            N    N+  Y ++  YR+ S+ ++IM E+ +NGPV+    V+EDF  YK G+Y H    +         G H+VK+ GWG  T  DG    YW  AN W  +WG  G+F+I RG NEC IE  V+
Sbjct:  329 NSYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGHFRIVRGVNECDIESFVL 453          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: TINAL_RAT (Tubulointerstitial nephritis antigen-like OS=Rattus norvegicus GN=Tinagl1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.571e-18
Identity = 55/151 (36.42%), Postives = 76/151 (50.33%), Query Frame = -2
Query:  257 AYPTPKCV----------RKCVKK---NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDV--------MGGHAVKLIGWG--TSDDGE--DYWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 634
            A PTP+C+          R+   +   +Q+  N  +     YR+ SD ++IM E+ +NGPV+    V+EDF  Y+ G+Y H              G H+VK+ GWG  T  DG    YW  AN W   WG  G+F+I RG NEC IE  V+
Sbjct:  303 ASPTPRCMMHSRAMGRGKRQATSRCPNSQVDSNDIYQVTPVYRLASDEKEIMKELMENGPVQALMEVHEDFFLYQRGIYSHTPVSQGRPEQYRRHGTHSVKITGWGEETLPDGRTIKYWTAANSWGPWWGERGHFRIVRGINECDIETFVL 453          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATC_SCHMA (Cathepsin C OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17
Identity = 51/130 (39.23%), Postives = 66/130 (50.77%), Query Frame = -2
Query:  269 TPKCVRKCVKKNQLWRNSKHYS-ISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDV---------MGGHAVKLIGWGTSD-DGEDYWILANQWNRSWGADGYFKIKRGSNECGIE 625
            T KC    V KN     +  YS I  Y   ++ + +  E+  NGP  V F VYEDF  YK G+Y H T            +  HAV L+G+G     GE YW + N W   WG  GYF+I RG++ECG+E
Sbjct:  318 TGKCT---VSKNCTRYYTTDYSYIGGYYGATNEKLMQLELISNGPFPVGFEVYEDFQFYKEGIYHHTTVQTDHYNFNPFELTNHAVLLVGYGVDKLSGEPYWKVKNSWGVEWGEQGYFRILRGTDECGVE 444          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATZ_RAT (Cathepsin Z OS=Rattus norvegicus GN=Ctsz PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.230e-14
Identity = 34/101 (33.66%), Postives = 51/101 (50.50%), Query Frame = -2
Query:  299 VKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKI 601
            ++   LWR   + S+S        E +MAEIY NGP+       E  ++Y  G+Y       +  H + + GWG S+DG +YWI+ N W   WG  G+ +I
Sbjct:  184 IQNYTLWRVGDYGSLSGR------EKMMAEIYANGPISCGIMATERMSNYTGGIYTEYQNQAIINHIISVAGWGVSNDGIEYWIVRNSWGEPWGERGWMRI 278          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATZ_MOUSE (Cathepsin Z OS=Mus musculus GN=Ctsz PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.165e-13
Identity = 34/101 (33.66%), Postives = 51/101 (50.50%), Query Frame = -2
Query:  299 VKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKI 601
            ++   LWR   + S+S        E +MAEIY NGP+       E  ++Y  G+Y       +  H + + GWG S+DG +YWI+ N W   WG  G+ +I
Sbjct:  184 IQNYTLWRVGDYGSLSGR------EKMMAEIYANGPISCGIMATEMMSNYTGGIYAEHQDQAVINHIISVAGWGVSNDGIEYWIVRNSWGEPWGEKGWMRI 278          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.987e-13
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = -2
Query:  272 AYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 553
            AY + S+ + +   +++ GPV V+  V  D  +YKSGV KH + D    H V L+G+G  +D + YW L N W   WG  G+F+IKR  N CGI
Sbjct:  242 AYDLRSEKK-LRQVLHEKGPVSVAIDVV-DLTNYKSGVAKHCSVDHGLNHGVLLVGYGQENDVK-YWTLKNSWGSDWGEQGFFRIKRDVNSCGI 332          
The following BLAST results are available for this feature:
BLAST of CN181493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CATC_MOUSE6.378e-2035.92Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=... [more]
YCF2E_CAEEL8.330e-2041.28Uncharacterized peptidase C1-like protein F26E4.3 ... [more]
CATC_BOVIN1.421e-1939.34Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 ... [more]
TINAL_MOUSE5.399e-1937.09Tubulointerstitial nephritis antigen-like OS=Mus m... [more]
TINAL_HUMAN9.210e-1940.00Tubulointerstitial nephritis antigen-like OS=Homo ... [more]
TINAL_RAT4.571e-1836.42Tubulointerstitial nephritis antigen-like OS=Rattu... [more]
CATC_SCHMA1.330e-1739.23Cathepsin C OS=Schistosoma mansoni PE=2 SV=1[more]
CATZ_RAT5.230e-1433.66Cathepsin Z OS=Rattus norvegicus GN=Ctsz PE=1 SV=2[more]
CATZ_MOUSE1.165e-1333.66Cathepsin Z OS=Mus musculus GN=Ctsz PE=2 SV=1[more]
CATV_GVXN1.987e-1341.49Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181493 ID=CN181493; Name=CN181493; organism=Citrus sinensis; type=EST; length=638bp
GAGGTTTTTTATTACAACTGGTTCTATTTTTACACACAACATTAAACTCC
ATTAATACATTCAATTATGCAAGACGGGAGCTTCCCATTTCATGCCTTGA
TAGCTTAGGTTCAACGATACACCCCTATAGCTACACATTTGATATATAAA
TAACAACATGAAGGTATAGCAAAGTCTGCTCTCAAGCTGAAGCATCCTCA
AACATATCTGCACTTGTAATCTCTTTGACAAGATTTTTGGATGAAGGCAA
ACCAGCAACCACATCCTCTTCAATACCACACTCATTTGATCCTCTTTTAA
TCTTGAAGTAACCATCCGCACCCCAGCTTCTATTCCACTGATTAGCGAGA
ATCCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAAC
AGCATGACCCCCCATTACATCGCCTGTGATGTGTTTGTAGACCCCAGATT
TGTAGTGAGCAAAATCCTCATAAACTGTGAAGGAAACTTCAACTGGTCCA
TTCTTGTAAATTTCTGCCATTATGTCCTCTGGATCAGAATTGATTCTATA
TGCACTAATACTGTAGTGCTTTGAATTCCTCCAAAGCTGGTTTTTCTTGA
CGCACTTCCTCACACACTTTGGAGTAGGATATGCCGGC
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