CN181493

Overview
NameCN181493
Unique NameCN181493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9664 contig Csv1_Contig9664:814..1451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATZ_BOVIN (Cathepsin Z OS=Bos taurus GN=CTSZ PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.390e-13
Identity = 41/127 (32.28%), Postives = 57/127 (44.88%), Query Frame = -2
Query:  245 VKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECG--------IEEDVVAGLP 601
            +K   LW+   + S+S        E +MAEIY NGP+       E  ++Y  G+Y          H V + GWG S DG +YWI+ N W   WG  G+ +I   + + G        IEE    G P
Sbjct:  183 IKNYTLWKVGDYGSLSGR------EKMMAEIYTNGPISCGIMATEKMSNYTGGIYSEYNDQAFINHIVSVAGWGVS-DGMEYWIVRNSWGEPWGEHGWMRIVTSTYKGGEGARYNLAIEESCTFGDP 302          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATC_PLAF7 (Probable cathepsin C OS=Plasmodium falciparum (isolate 3D7) GN=PF11_0174 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.427e-13
Identity = 47/135 (34.81%), Postives = 64/135 (47.41%), Query Frame = -2
Query:  269 KKNQLWRNSKHYSISAYRIN--SDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVY--------------------KHITGDVMGGHAVKLIGWGTSD-DGE--DYWILANQWNRSWGADGYFKIKRGSNECGIE 598
            ++N+ +    +Y    Y  N  +  + +M EIY+NGP+  SF    DF  Y  GVY                     +ITG     HA+ L+GWG  + +G+   YWI  N W   WG +GYFKI RG N  GIE
Sbjct:  538 EENRWYAKDFNYVGGCYGCNQCNGEKIMMNEIYRNGPIVSSFEASPDFYDYADGVYFVEDFPHARRCTIEPKNDGVYNITGWDRVNHAIVLLGWGEEEINGKLYKYWIGRNSWGNGWGKEGYFKILRGQNFSGIE 672          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATZ_HUMAN (Cathepsin Z OS=Homo sapiens GN=CTSZ PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 35/94 (37.23%), Postives = 46/94 (48.94%), Query Frame = -2
Query:  299 RNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKI 580
            RN   + +  Y   S  E +MAEIY NGP+       E  A+Y  G+Y          H V + GWG S DG +YWI+ N W   WG  G+ +I
Sbjct:  183 RNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGIS-DGTEYWIVRNSWGEPWGERGWLRI 275          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.288e-12
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = -2
Query:  272 PVEVSFTVYEDFAHYKSGVYK----HITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 496
            PV  +F V EDF  YKSGVY     H T D +  HAV  +G+G   +G  YWI+ N W  +WG +GYF I+RG N CG+
Sbjct:  246 PVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVN-HAVLAVGYG-EQNGLLYWIVKNSWGSNWGNNGYFLIERGKNMCGL 322          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.288e-12
Identity = 38/79 (48.10%), Postives = 47/79 (59.49%), Query Frame = -2
Query:  272 PVEVSFTVYEDFAHYKSGVYK----HITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 496
            PV  +F V EDF  YKSGVY     H T D +  HAV  +G+G   +G  YWI+ N W   WG +GYF I+RG N CG+
Sbjct:  246 PVSFAFEVTEDFLMYKSGVYSSKSCHKTPDKVN-HAVLAVGYG-EQNGLLYWIVKNSWGSQWGENGYFLIERGKNMCGL 322          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.682e-12
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = -2
Query:  272 PVEVSFTVYEDFAHYKSGVYKHIT-GDVMG--GHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 496
            PV V+F V + F  YKSGVY     GD      HAV  +G+G  ++G  YW++ N W   WG DGYFK++ G N CG+
Sbjct:  270 PVSVAFEVVKGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGV-ENGTPYWLIKNSWGADWGEDGYFKMEMGKNMCGV 346          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.870e-12
Identity = 36/81 (44.44%), Postives = 46/81 (56.79%), Query Frame = -2
Query:  272 PVEVSFTVYEDFAHYKSGVYKHITGDVMG------GHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 496
            PV V+F V   F  YKSGVY   T D  G       HAV  +G+G  +DG  YW++ N W   WG +GYFK++ G N CG+
Sbjct:  274 PVSVAFEVITGFRLYKSGVY---TSDHCGTTPMDVNHAVLAVGYGV-EDGVPYWLIKNSWGADWGDEGYFKMEMGKNMCGV 350          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.870e-12
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = -2
Query:  272 SDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYK----HITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 538
            +D E ++  +    PV  +F V  DF  Y+ G+Y     H T D +  HAV  +G+G  ++G  YWI+ N W   WG +GYF I+RG N CG+
Sbjct:  234 NDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVN-HAVLAVGYG-EENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGL 324          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 3.748e-12
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = -2
Query:  272 DPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYK----HITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 535
            D E ++  +    PV  +F V +DF  Y++G+Y     H T D +  HAV  +G+G  + G  YWI+ N W   WG +GYF I+RG N CG+
Sbjct:  235 DEEAMVEAVALYNPVSFAFEVTQDFMMYRTGIYSSTSCHKTPDKVN-HAVLAVGYGEKN-GIPYWIVKNSWGPQWGMNGYFLIERGKNMCGL 324          
BLAST of CN181493 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.748e-12
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = -2
Query:  272 SDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYK----HITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 538
            +D E ++  +  + PV  +F V  DF  Y+ G+Y     H T D +  HAV  +G+G  + G  YWI+ N W  +WG  GYF I+RG N CG+
Sbjct:  234 NDEEAMVEAVALHNPVSFAFEVTADFMMYRKGIYSSTSCHKTPDKVN-HAVLAVGYG-EEKGIPYWIVKNSWGPNWGMKGYFLIERGKNMCGL 324          
The following BLAST results are available for this feature:
BLAST of CN181493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CATZ_BOVIN3.390e-1332.28Cathepsin Z OS=Bos taurus GN=CTSZ PE=2 SV=2[more]
CATC_PLAF74.427e-1334.81Probable cathepsin C OS=Plasmodium falciparum (iso... [more]
CATZ_HUMAN7.552e-1337.23Cathepsin Z OS=Homo sapiens GN=CTSZ PE=1 SV=1[more]
CATH_RAT1.288e-1248.10Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CATH_MOUSE1.288e-1248.10Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CYSP3_SOLLC1.682e-1244.87Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CYSP2_MAIZE2.870e-1244.44Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
CATH_PIG2.870e-1238.71Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATH_HUMAN3.748e-1239.13Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
CATH_BOVIN3.748e-1238.71Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181493 ID=CN181493; Name=CN181493; organism=Citrus sinensis; type=EST; length=638bp
GAGGTTTTTTATTACAACTGGTTCTATTTTTACACACAACATTAAACTCC
ATTAATACATTCAATTATGCAAGACGGGAGCTTCCCATTTCATGCCTTGA
TAGCTTAGGTTCAACGATACACCCCTATAGCTACACATTTGATATATAAA
TAACAACATGAAGGTATAGCAAAGTCTGCTCTCAAGCTGAAGCATCCTCA
AACATATCTGCACTTGTAATCTCTTTGACAAGATTTTTGGATGAAGGCAA
ACCAGCAACCACATCCTCTTCAATACCACACTCATTTGATCCTCTTTTAA
TCTTGAAGTAACCATCCGCACCCCAGCTTCTATTCCACTGATTAGCGAGA
ATCCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAAC
AGCATGACCCCCCATTACATCGCCTGTGATGTGTTTGTAGACCCCAGATT
TGTAGTGAGCAAAATCCTCATAAACTGTGAAGGAAACTTCAACTGGTCCA
TTCTTGTAAATTTCTGCCATTATGTCCTCTGGATCAGAATTGATTCTATA
TGCACTAATACTGTAGTGCTTTGAATTCCTCCAAAGCTGGTTTTTCTTGA
CGCACTTCCTCACACACTTTGGAGTAGGATATGCCGGC
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