CN181492

Overview
NameCN181492
Unique NameCN181492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:156..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.796e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  227 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 472
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.796e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  227 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 472
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.796e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  227 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 472
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.796e-13
Identity = 36/91 (39.56%), Postives = 59/91 (64.84%), Query Frame = -1
Query:  239 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 511
            + L+ + +  +L+V DF A+WCGPC+ +AP L  +AK+   V+F+K+DVDE + VA  + V AMPT +  K G  +  VVG+ +  +++ I
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELI 103          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.346e-13
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  239 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 475
            VV+D    WCGPC+ +AP   ELA+KL +V+FLK+D + E K +A +  +  +PTF  LK GKIVD+V G+K ++L   I
Sbjct:  106 VVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAI 185          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.346e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  227 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 472
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.346e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  227 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 472
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.346e-13
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = -1
Query:  227 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 475
            V+VDF A WCGPCR +AP + E+A++    +  +KV+ DE   VA+ + + ++PT M  K G+ VD VVG+  K  L QT+ KHL
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.346e-13
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = -1
Query:  227 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 475
            V+VDF A WCGPCR +AP + E+A++    +  +KV+ DE   VA+ + + ++PT M  K G+ VD VVG+  K  L QT+ KHL
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of CN181492 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.064e-13
Identity = 40/114 (35.09%), Postives = 67/114 (58.77%), Query Frame = -1
Query:  233 AEMAAAEEGQVIGCHPVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 574
            AE+   EEG V      E + E L+ + E  +LV VDF+A+WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  +  +PTF F K  + V +  G+   +L+++I++
Sbjct:  402 AEIETLEEGLVRVIKDKEEFEEVLKDAGE--KLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 513          
The following BLAST results are available for this feature:
BLAST of CN181492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
THIO_STAAB1.796e-1348.81Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA81.796e-1348.81Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA31.796e-1348.81Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO_ECHGR1.796e-1339.56Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
TRXF_MESCR2.346e-1347.50Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO_STAES2.346e-1348.81Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ2.346e-1348.81Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO1_ANASP2.346e-1344.71Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO2.346e-1344.71Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
TXND2_MOUSE3.064e-1335.09Thioredoxin domain-containing protein 2 OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181492 ID=CN181492; Name=CN181492; organism=Citrus sinensis; type=EST; length=604bp
AACAACAAAGAACGATCTACCCCAAATATGAAATTAAATTATTGTAAAGA
CCACAGTATGAGCTTCATAGAACAGTAAATTACGGAATATTCAAACACAC
AAACAAACACAATCCCATAACCACTCTAATAAGTAAATTACAGACTGATA
GCATATATTGAGGTCTATAGCCTCTAAAGCCAAAAGGCAGGAGGATAGTT
ATAACTTATTAGGCAGAGGCAGTTGCCAGATGCTTGGCAATAGTCTGCTG
CAGTTCCTCTTTCTTTGATCCAACCACCTTGTCCACAATCTTCCCCTCTT
TCAGGAACATGAAAGTTGGCATGGCCTCCACTGCCCAGTCAGTGGCAACA
CTCTTCAGTTCATCCACATCAACCTTCAGAAACAGGACATTAGGCAGTTT
CTTGGCCAGCTCTGCCAAGAAAGGAGCAATGAAACGGCATGGTCCGCACC
ACGAAGCAGTGAAATCAACAACAACCAGCTGTTTGGTTTCATTGCTCTTC
TGGAGCTGCTCGTTCCAGGCCTCAACGGGGTGGCACCCGATGACTTGTCC
CTCTTCTGCTGCTGCCATTTCTGCTTTCCGCGGTTATTACCACCACTACT
CCAC
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