CN181489

Overview
NameCN181489
Unique NameCN181489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2265 contig Csv1_Contig2265:607..1273. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 56/122 (45.90%), Postives = 69/122 (56.56%), Query Frame = -3
Query:  132 YPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDY 497
            YP CP+P    G+  HTD   LTIL QD  GGLQ+     W+ VKP P AL+INIGD+ Q  SN  Y SVEHRV+ N   E R S A F  PS     Y    E  S ++PA +R F+  ++
Sbjct:  200 YPPCPKPSEVYGLMPHTDSDFLTILYQDQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVE-RFSTAYFMCPS-----YDAVIE-CSSDRPA-YRNFSFREF 313          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.690e-18
Identity = 51/120 (42.50%), Postives = 68/120 (56.67%), Query Frame = -3
Query:  144 HYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFT 503
            +YYP C +P  T+G   H DP  LTIL QD  GGL++     W  ++P PGALV+N+GD    +SN  Y S  HR + NS+  PR S+A F  P E D++  P  EL+    P  +  FT
Sbjct:  217 NYYPACQRPLDTLGTGPHCDPTSLTILHQDHVGGLEVWAEGRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNST-APRRSLAFFLCP-EMDTVVRPPEELVDDHHPRVYPDFT 334          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 47/126 (37.30%), Postives = 73/126 (57.94%), Query Frame = -3
Query:  129 HYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEE-WVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 503
            ++YP CP+PD  +G+ +HTD   +TIL Q++  GLQ+   +  WV   PVPG+LV+N+GD+L I++N  + SV HR   N     R S+A  + P   D +  P P+L+ P +   +   T   Y+
Sbjct:  208 NHYPKCPEPDRAMGLAAHTDSTLMTILYQNNTAGLQVFRDDVGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLHRARVN-HVRSRFSMAYLWGPPS-DIMISPLPKLVDPLQSPLYPSLTWKQYL 331          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 54/175 (30.86%), Postives = 90/175 (51.43%), Query Frame = -3
Query:  129 PEICRKEAVEWNHHVKQXXXXXXXXXXXXXXLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 653
            P   R+   E+  HVK               L  + +KE       M + HY PY P  D   G+  HTD   LT+++ ++  GLQ+   + W++V+ +P A+++NIGD + ++SN +Y +V H+   +   + R+S  V  SP+  D + GP PEL S + P +F+   + DY+
Sbjct:  109 PPDYREVNEEYARHVKTLSEKIMEWLSEGLGLGREAIKEVNGCWYVMNINHYPPY-PHSDSFNGLEPHTDINGLTLIITNEIPGLQVFKDDHWIEVEYIPSAIIVNIGDQIMMLSNGKYKNVLHKTTVDKE-KTRMSWPVLVSPT-YDMVVGPLPELTSEDDPPKFKPIAYKDYV 280          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.095e-17
Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = -3
Query:  150 HYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSP------------------SERDSLYGPFPELISPEKPARFRQ 503
            +YYP CPQP+L +G+ +HTD   LT +L +   GLQ+ +  +WV  K VP +++++IGD ++I+SN +Y S+ HR L N   + RIS AVF  P                  S   S   PFP + S     R R+
Sbjct:  221 NYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGLVNKE-KVRISWAVFCEPPKEKIILKAHCQRRCLRLSHHSSHLAPFPNIFSTSSSGRPRR 355          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.430e-17
Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = -3
Query:  129 HYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 503
            ++YP CP PD  +G   H D   +T+LL     GL++ +  +W+ V P P A V+N G  L++++N    S+EHR + NS+   R S+A F  P++ + L GP  E +S E P  +R     D++
Sbjct:  192 NHYPSCPNPDKALGQPPHCDRNLITLLLPGAVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNSA-LARTSVATFIMPTQ-ECLIGPAKEFLSKENPPCYRTTMFRDFM 314          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.430e-17
Identity = 54/137 (39.42%), Postives = 70/137 (51.09%), Query Frame = -3
Query:  144 RLKEKTFLEGR--MMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFT 548
            R   + F EG   +M  +YYP C +P  T+G   H DP  LTIL QD+ GGLQ+     W  ++P   A V+NIGD    +SN  Y S  HR + NS   PR S+A F  P E D +  P   L+    P  +  FT
Sbjct:  190 RAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSK-VPRKSLAFFLCP-EMDKVVAPPGTLVDAANPRAYPDFT 324          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 54/137 (39.42%), Postives = 70/137 (51.09%), Query Frame = -3
Query:  144 RLKEKTFLEGR--MMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFT 548
            R   + F EG   +M  +YYP C +P  T+G   H DP  LTIL QD+ GGLQ+     W  ++P   A V+NIGD    +SN  Y S  HR + NS   PR S+A F  P E D +  P   L+    P  +  FT
Sbjct:  190 RAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSR-VPRKSLAFFLCP-EMDKVVAPPGTLVDASNPRAYPDFT 324          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 54/137 (39.42%), Postives = 70/137 (51.09%), Query Frame = -3
Query:  144 RLKEKTFLEGR--MMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFT 548
            R   + F EG   +M  +YYP C +P  T+G   H DP  LTIL QD+ GGLQ+     W  ++P   A V+NIGD    +SN  Y S  HR + NS   PR S+A F  P E D +  P   L+    P  +  FT
Sbjct:  190 RAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSR-VPRKSLAFFLCP-EMDKVVAPPGTLVDAANPRAYPDFT 324          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 49/127 (38.58%), Postives = 74/127 (58.27%), Query Frame = -3
Query:  129 HYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQI-KHG-EEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 503
            ++YP CP P   +G+ +HTD G  T +LQ    GLQ+ +HG + WV V  VPGA+V+N+GD+ QI++N  + SV HR + N   + RIS+  F  P     +  P  E ++   PA +R  T  +Y+
Sbjct:  212 NWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESD-RISLGYFLGPPAHVKV-APLREALA-GTPAAYRAVTWPEYM 335          
The following BLAST results are available for this feature:
BLAST of CN181489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
G2OX8_ARATH7.584e-1945.90Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
GAOX1_ORYSJ1.690e-1842.50Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
G3OX2_ARATH2.207e-1837.30Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
FLS_MATIN2.207e-1830.86Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]
LDOX_VITVI1.095e-1736.76Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
IDS3_HORVU1.430e-1735.202'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
GAO1B_WHEAT1.430e-1739.42Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAO1A_WHEAT1.868e-1739.42Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
GAO1D_WHEAT2.440e-1739.42Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
G3O23_WHEAT3.186e-1738.58Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181489 ID=CN181489; Name=CN181489; organism=Citrus sinensis; type=EST; length=667bp
GAATTGTTATTCTTACGTAAGAATAGTTTATACAGGCACAAACAACCAGA
TTTACCAAGTTTTGTTTCTTACAGCCTATAGTAATTCACCAATGTTTTTC
CATCTAACTGTTTTGTGAAGAACCTTGTTATATAGTCCGTGTGTGTGAAC
TGCCGAAAACGAGCTGGCTTCTCTGGGGATATCAGCTCCGGGAATGGTCC
ATAAAGGCTGTCCCTCTCGCTTGGACTGAAGAAAACAGCAATTGAGATTC
GTGGTTCCGGGGACGAATTAGCCAATACTCTATGCTCTACACTTATGTAT
TCATCATTGGACATAATCTGAAGTATATCCCCAATGTTAATAACCAGAGC
TCCTGGAACTGGTTTAACATCCACCCATTCCTCACCATGCTTAATTTGCA
GCCCACCTTTATCATCTTGCAACAAGATTGTCAATGGCCCTGGATCAGTA
TGAGATGTGATCCCCACTGTCAGATCAGGCTGCGGACAGTAGGGATAATA
ATGGCCCACCATCATCCTCCCTTCCAGGAAGGTCTTTTCCTTCAACCTAT
CGGTTTTCAACCCCAAACCTTCACACAGCAGCCCAAACAAAAGCTCTCCG
AGCTGTTTTACATGGTGGTTCCACTCGACTGCCTCTTTCCTACATATTTC
AGGAACTTCTTCAAGCT
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