CN181489

Overview
NameCN181489
Unique NameCN181489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2265 contig Csv1_Contig2265:607..1273. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 49/127 (38.58%), Postives = 74/127 (58.27%), Query Frame = -3
Query:  129 HYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQI-KHG-EEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 503
            ++YP CP P   +G+ +HTD G  T +LQ    GLQ+ +HG + WV V  VPGA+V+N+GD+ QI++N  + SV HR + N   + RIS+  F  P     +  P  E ++   PA +R  T  +Y+
Sbjct:  212 NWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSD-RISLGYFLGPPAHVKV-APLREALA-GTPAAYRAVTWPEYM 335          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 49/127 (38.58%), Postives = 74/127 (58.27%), Query Frame = -3
Query:  129 HYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQI-KHG-EEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 503
            ++YP CP P   +G+ +HTD G  T +LQ    GLQ+ +HG + WV V  VPGA+V+N+GD+ QI++N  + SV HR + N   + RIS+  F  P     +  P  E ++   PA +R  T  +Y+
Sbjct:  212 NWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSD-RISLGYFLGPPAHVKV-APLREALA-GTPAAYRAVTWPEYM 335          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 47/124 (37.90%), Postives = 73/124 (58.87%), Query Frame = -3
Query:  129 YPYCPQPDLTVGITSHTDPGPLTILLQDDK-GGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 497
            YP CP+P++  G+ +HTD G + +L QDDK  GLQ+    +W+DV P+  ++VIN+GD L++++N  Y S+ HRV+       R+SIA F++P   D+   P   L    K   +  F   DY+
Sbjct:  165 YPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRVVTQKEGN-RMSIASFYNPGS-DAEISPASSLAC--KETEYPSFVFDDYM 284          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.601e-16
Identity = 48/127 (37.80%), Postives = 69/127 (54.33%), Query Frame = -3
Query:  129 HYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPA--RFRQFTHTDYI 503
            +YYP C QP+L +G   H DP  LTIL QD  GGLQ+    +W  + P P A V+NIGD    ++N  Y S  HR + NS  E R + A F  P + + +  P  EL++  K    ++  FT + ++
Sbjct:  229 NYYPQCKQPELALGTGPHCDPTSLTILHQDQVGGLQVFVDNKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERE-RKTFAFFLCP-KGEKVVKPPEELVNGVKSGERKYPDFTWSMFL 353          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.601e-16
Identity = 45/125 (36.00%), Postives = 68/125 (54.40%), Query Frame = -3
Query:  129 HYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 503
            ++YP C  PDLT+G   H DP  LTIL QD   GLQ+    +W  ++P P A V+NIGD    +SN  + S  HR + N     R S+A F  P ++D +  P  +++   K  ++  FT + ++
Sbjct:  228 NHYPPCQTPDLTLGTGPHCDPSSLTILHQDHVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRE-SARKSMAFFLCP-KKDKVVKPPSDILEKMKTRKYPDFTWSMFL 350          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.009e-16
Identity = 47/151 (31.13%), Postives = 86/151 (56.95%), Query Frame = -3
Query:   72 RMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQ--IKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYRL 518
            +MM+ +YYP CP P  T+G   H D G L  LLQ D  GLQ  I     W+ V+P+P A V+N+G  L++++N+++    HRV+ + + + R+SIA    P +      P  EL++ + P  ++ ++++++   + + + D  + V  Y++
Sbjct:  195 QMMLTNYYPPCPDPSSTLGSGGHYD-GNLITLLQQDLPGLQQLIVKDATWIAVQPIPTAFVVNLGLTLKVITNEKFEGSIHRVVTDPTRD-RVSIATLIGP-DYSCTIEPAKELLNQDNPPLYKPYSYSEFADIYLSDKSDYDSGVKPYKI 342          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.009e-16
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = -3
Query:   72 HYYPYCPQPDLT----VGITSHTDPGPLTILLQDDKGGLQIKHGE-EWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYRL 503
            ++YP CP+  +     +G   HTDP  ++IL  ++  G QI   +  W+ V P   +  IN+GD LQ+M+N  + SV HRVLAN   +PR+S+  F  P   + +  P P L+   K + +++FT  +Y +  +  +L    L NY R+
Sbjct:  179 NHYPACPELAINGENLIGFGEHTDPQIISILRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGI-DPRLSMIYFCGPPLSEKI-APLPSLMK-GKESLYKEFTWFEYKSSTYGSRLADNRLGNYERI 324          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 45/133 (33.83%), Postives = 76/133 (57.14%), Query Frame = -3
Query:   72 VGITSHTDPGPLTILLQDDKGGLQIK-HGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYRL 467
            +G   H+DP  LTIL  ++ GGLQI  H   W+ V P P    + +GD LQ+++N  ++SV HRVL N++ +PR+S+  F +P   + L  P  ++++   P  +R FT   Y    +  +L G T ++ +++
Sbjct:  204 IGFGEHSDPQILTILRSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNTT-KPRMSMMYFAAP-PLNWLISPLSKMVTAHSPCLYRPFTWAQYKQAAYALRL-GDTRLDQFKV 333          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.525e-14
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = -3
Query:  129 YPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIK----HGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 497
            YP CP P L +G+  HTD   LTIL Q +  GL+I+     G  W+ V+P+ G+LV+ +GD+  I+SN ++ S  HR + N +   R+S A F  P +   + GP         P  +R+    +Y+
Sbjct:  211 YPVCPDPHLAMGLAPHTDSSLLTILYQGNIPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKT-HHRVSAAYFAGPPKNLQI-GPLTS--DKNHPPIYRRLIWEEYL 333          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14
Identity = 46/148 (31.08%), Postives = 81/148 (54.73%), Query Frame = -3
Query:   75 HYYPYCPQPDLT----VGITSHTDPGPLTILLQDDKGGLQIKHGE-EWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYR 503
            ++YP CP+        VG   HTDP  +++L  +   GLQI   +  WV V P   +  IN+GD LQ+M+N  + SV+HRVLA+++ + R+S+  F  P+  +++  P P ++   +   +++FT  +Y    +T +L    L  + +
Sbjct:  183 NHYPPCPEVQALNRNLVGFGEHTDPQIISVLRSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADTT-KSRLSMIYFGGPALSENI-APLPSVMLKGEECLYKEFTWCEYKKAAYTSRLADNRLAPFQK 328          
The following BLAST results are available for this feature:
BLAST of CN181489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
G3O22_WHEAT3.186e-1738.58Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT3.186e-1738.58Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
ACCO1_BRAJU4.162e-1737.901-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
GAOX3_ARATH4.601e-1637.80Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
GAOX2_ARATH4.601e-1636.00Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
HY6H_HYONI6.009e-1631.13Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
G2OX1_PEA6.009e-1633.56Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
G2OX2_PEA2.982e-1533.83Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]
G3OX3_ARATH2.525e-1434.65Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G2OX_PHACN3.297e-1431.08Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181489 ID=CN181489; Name=CN181489; organism=Citrus sinensis; type=EST; length=667bp
GAATTGTTATTCTTACGTAAGAATAGTTTATACAGGCACAAACAACCAGA
TTTACCAAGTTTTGTTTCTTACAGCCTATAGTAATTCACCAATGTTTTTC
CATCTAACTGTTTTGTGAAGAACCTTGTTATATAGTCCGTGTGTGTGAAC
TGCCGAAAACGAGCTGGCTTCTCTGGGGATATCAGCTCCGGGAATGGTCC
ATAAAGGCTGTCCCTCTCGCTTGGACTGAAGAAAACAGCAATTGAGATTC
GTGGTTCCGGGGACGAATTAGCCAATACTCTATGCTCTACACTTATGTAT
TCATCATTGGACATAATCTGAAGTATATCCCCAATGTTAATAACCAGAGC
TCCTGGAACTGGTTTAACATCCACCCATTCCTCACCATGCTTAATTTGCA
GCCCACCTTTATCATCTTGCAACAAGATTGTCAATGGCCCTGGATCAGTA
TGAGATGTGATCCCCACTGTCAGATCAGGCTGCGGACAGTAGGGATAATA
ATGGCCCACCATCATCCTCCCTTCCAGGAAGGTCTTTTCCTTCAACCTAT
CGGTTTTCAACCCCAAACCTTCACACAGCAGCCCAAACAAAAGCTCTCCG
AGCTGTTTTACATGGTGGTTCCACTCGACTGCCTCTTTCCTACATATTTC
AGGAACTTCTTCAAGCT
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