CN181489

Overview
NameCN181489
Unique NameCN181489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2265 contig Csv1_Contig2265:607..1273. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.346e-14
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  132 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDY 464
            G+  HTD   LTIL QD  GGL++++  +W+ VKP   AL +NIGD+ Q +SN  Y SV HRV++ ++ E R+SIA F  P           E+     P ++R+F+  +Y
Sbjct:  212 GLVPHTDTSFLTILSQDQIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIE-RMSIAFFVCPYLE-------TEIDCFGYPKKYRRFSFREY 314          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 47/151 (31.13%), Postives = 74/151 (49.01%), Query Frame = -3
Query:   75 HYYPYCPQPDL-------TVGITSHTDPGPLTILLQDDKGGLQIKHGE-EWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYR 503
            ++YP CP  +         +G   HTDP  +++L  ++  GLQI   +  W+ V P   +   N+GD LQ+M+N  + SV HRVLAN   + R+S+  F  PS    +  P   LI  E    + +FT ++Y    +  +L    L  + R
Sbjct:  173 NHYPPCPLSNKKTNGGKNVIGFGEHTDPQIISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCK-KSRVSMIYFAGPSLTQRI-APLTCLIDNEDERLYEEFTWSEYKNSTYNSRLSDNRLQQFER 321          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 44/123 (35.77%), Postives = 68/123 (55.28%), Query Frame = -3
Query:  105 VGITSHTDPGPLTILLQDDKGGLQI--KHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQL 467
            VG   HTDP  +++L  ++  GLQI  K G  WV V P   +  IN+GD LQ+M+N  + SV+HRVLA++    RIS+  F  P     +  P P L+  +    +++FT + Y +  +  +L
Sbjct:  202 VGFGEHTDPQIISVLRSNNTAGLQICVKDGS-WVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTR-RSRISMIYFGGPPLSQKI-APLPCLVPEQDDWLYKEFTWSQYKSSAYKSKL 321          
BLAST of CN181489 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 53/169 (31.36%), Postives = 82/169 (48.52%), Query Frame = -3
Query:   72 KTDRLKEKTFLEGRMMVGHYYPYCPQPDLT-----VGITSHTDPGPLTILLQDDKGGLQI--KHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYRL 557
            K  RL +    +  + + HY    P+ + T     +G   HTDP  +++L  +D  GLQI  K G  WVDV P   +  + +GD LQ+M+N  + SV+HRV+ N+    RIS+  F  P   + +  P   L+  +    + +FT + Y      K    KT +  YRL
Sbjct:  166 KLSRLVKVKESDSCLRMNHY----PEKEETPVKEEIGFGEHTDPQLISLLRSNDTEGLQICVKDGT-WVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTK-RSRISMIYFAGPPLSEKI-APLSCLVPKQDDCLYNEFTWSQY------KLSAYKTKLGDYRL 321          
The following BLAST results are available for this feature:
BLAST of CN181489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
G2OX7_ARATH7.346e-1439.64Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
G2OX1_ARATH1.253e-1331.13Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G2OX2_ARATH6.875e-1235.77Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G2OX3_ARATH4.457e-1131.36Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181489 ID=CN181489; Name=CN181489; organism=Citrus sinensis; type=EST; length=667bp
GAATTGTTATTCTTACGTAAGAATAGTTTATACAGGCACAAACAACCAGA
TTTACCAAGTTTTGTTTCTTACAGCCTATAGTAATTCACCAATGTTTTTC
CATCTAACTGTTTTGTGAAGAACCTTGTTATATAGTCCGTGTGTGTGAAC
TGCCGAAAACGAGCTGGCTTCTCTGGGGATATCAGCTCCGGGAATGGTCC
ATAAAGGCTGTCCCTCTCGCTTGGACTGAAGAAAACAGCAATTGAGATTC
GTGGTTCCGGGGACGAATTAGCCAATACTCTATGCTCTACACTTATGTAT
TCATCATTGGACATAATCTGAAGTATATCCCCAATGTTAATAACCAGAGC
TCCTGGAACTGGTTTAACATCCACCCATTCCTCACCATGCTTAATTTGCA
GCCCACCTTTATCATCTTGCAACAAGATTGTCAATGGCCCTGGATCAGTA
TGAGATGTGATCCCCACTGTCAGATCAGGCTGCGGACAGTAGGGATAATA
ATGGCCCACCATCATCCTCCCTTCCAGGAAGGTCTTTTCCTTCAACCTAT
CGGTTTTCAACCCCAAACCTTCACACAGCAGCCCAAACAAAAGCTCTCCG
AGCTGTTTTACATGGTGGTTCCACTCGACTGCCTCTTTCCTACATATTTC
AGGAACTTCTTCAAGCT
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